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39 Open 73 Closed
39 Open 73 Closed
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Issues list

False positive recombinants
#279 opened Dec 20, 2024 by jeromekelleher
Relevant pango-designation issues
#278 opened Dec 20, 2024 by szhan
Add code to generate Zarr dataset
#274 opened Dec 18, 2024 by jeromekelleher
Seeds for B.1.617
#272 opened Dec 17, 2024 by szhan
2
Add a snakemake script to automate generation of MAFFT alignments
#270 opened Dec 17, 2024 by szhan
Seeds for B.1.617.1 and B.1.617.2 (Delta)
#267 opened Dec 17, 2024 by szhan
Seeds for BA.4
#266 opened Dec 17, 2024 by szhan
Seeds for BA.2
#265 opened Dec 17, 2024 by szhan
15
Seeds for BA.1
#264 opened Dec 17, 2024 by szhan
9
Deposit VCF Zarr version of mafft aligned Viridian sequences and metadata to Figshare
#262 opened Dec 16, 2024 by jeromekelleher
3
Is Delta (B.1.167.2) a recombinant?
#258 opened Dec 10, 2024 by hyanwong
19
Position of 11288-11296 deletion
#256 opened Dec 4, 2024 by hyanwong
7
Source of sample date for Viridian data
#253 opened Nov 27, 2024 by jeromekelleher
14
Adding deletions, and testing compatibility with Dollo parsimony
#250 opened Nov 26, 2024 by hyanwong
9
Origins of BA.2 and BA.4/BA.5
#249 opened Nov 26, 2024 by hyanwong
35
Nucleotide mutations for Usher tree
#244 opened Nov 13, 2024 by jeromekelleher
2
Remove masked sites from lineage imputation requirements
#234 opened Nov 8, 2024 by hyanwong
1
Origins of delta
#226 opened Oct 14, 2024 by hyanwong
51
Origins of Alpha
#225 opened Oct 10, 2024 by hyanwong
7
Add Nextstrain clade labels to node metadata
#223 opened Sep 26, 2024 by szhan
2
Visualisation of simplified backbone phylogenies
#222 opened Sep 25, 2024 by szhan
4
Comparing mutation sets above Pango lineage roots
#221 opened Sep 25, 2024 by szhan
Paragraph on trade-offs between removing time travellers and capturing early stages of an outbreak
#220 opened Sep 23, 2024 by hyanwong
Variant-specific mutational spectra
#216 opened Sep 21, 2024 by szhan
1
Nodes with larger polytomies in the Viridian ARG
#215 opened Sep 20, 2024 by hyanwong
13
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