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Add Nextstrain clade labels to node metadata #223

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szhan opened this issue Sep 26, 2024 · 2 comments
Open

Add Nextstrain clade labels to node metadata #223

szhan opened this issue Sep 26, 2024 · 2 comments

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@szhan
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szhan commented Sep 26, 2024

It makes it easier to compare our trees with the Nextstrain tree and replicate some published analysis, e.g. Bloom et al.'s mutational spectra across variants.

These definitions are probably more stable (and clearly far fewer) than the pangolin ones:
https://github.com/nextstrain/ncov/blob/master/defaults/clades.tsv

@jeromekelleher
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Do we have these for all samples? A similar argument against adding metadata that we curate applies as in #223

@szhan
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szhan commented Sep 26, 2024

I'm just hoping to label the root node of the clades, not all the samples.

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