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25 Open 5 Closed
25 Open 5 Closed
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Issues list

whether the LDhat software can output the crossovers per individual
#31 opened Nov 8, 2024 by ChinJCheung
Can we specify the random seed prior to 'complete'?
#30 opened Oct 4, 2024 by Gullumluvl
2
pairwise is killed
#29 opened May 20, 2024 by emgiles
How to deal with this error in LDhat: SNPs not monotonically increasing
#28 opened Apr 30, 2024 by itsmestewart
Minor installation suggestion
#27 opened Jan 15, 2024 by markcharder
2
Low mean rho estimated by interval
#26 opened Aug 19, 2022 by tahia
Using LDhat with genotyping by sequencing data and isolated populations
#25 opened Jul 16, 2022 by dosshra
Tracer plots for LDhat run
#24 opened Jun 14, 2022 by Homap
1
interval for sex chromosomes
#22 opened Jun 10, 2022 by Homap
2
rhomap results with extremely high 4Ner/kb
#21 opened May 25, 2022 by masen1991
9
Advice on my study and parameters for complete
#19 opened May 4, 2021 by ptranvan
1
Composite-likelihood and rho plot
#16 opened Nov 3, 2020 by Homap
3
max rho higher than 100?
#15 opened Jul 30, 2020 by Phylloxera
1
Shared a lookup table for n = 320 (theta = 0.01)
#14 opened Jul 7, 2020 by jshoyer
2
likelihood file for different no. seqs than data
#13 opened May 29, 2020 by enocI21
4
Clarifications on stat output results
#12 opened Jan 21, 2020 by PlantDr430
LDhat Error in locs file: SNPs must be montonically increasing
#11 opened Mar 12, 2019 by Trevor-Schmahl
3
LDhat not recognizing unphased 'seq' file
#10 opened Oct 29, 2018 by twooldridge
1
allocation failure 2 in imatrix()
#9 opened Oct 17, 2018 by prasundutta87
look up table for water buffalo
#8 opened Sep 5, 2018 by prasundutta87
How to convert recombination rate data from LDHAT to genetic map?
#7 opened Jul 31, 2018 by SC-Duan
compute recombination rate by scaffold?
#6 opened May 17, 2018 by mariels
non-model species, unphased genotype data from whole-genome sequencing
#5 opened Nov 20, 2017 by vicenciooostra
2
Setting a proper theta in filtered/subsampled SNP datasets
#4 opened Oct 9, 2017 by melop
2
Input file
#2 opened Nov 2, 2016 by tanu06
ProTip! What’s not been updated in a month: updated:<2024-11-23.