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Issues: CCBR/Pipeliner

24 Open 69 Closed
24 Open 69 Closed
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Issues list

groups.tab: Add validation test bug enhancement
#478 opened Dec 29, 2022 by kopardev
RNASeq DE naming error due to "." in sample
#476 opened Sep 8, 2022 by slsevilla
1
Use msigdb for pathway analysis; perform additional analysis on specific db/pathway
#474 opened Aug 8, 2022 by slsevilla
1
Parse GTF on the fly RNASeq
#462 opened Oct 29, 2020 by kopardev
1
Move to STAR version >= 2.7.6a RNASeq
#461 opened Oct 29, 2020 by kopardev
1
Improvement to differential expression html reports RNASeq
#459 opened Sep 3, 2020 by tovahmarkowitz
Calculate actual mean fragment length for PE data. Use for sicer PE. ChIPSeq
#458 opened Aug 31, 2020 by tovahmarkowitz
Fix error with PE duplicate removal. Incorporate Vishal's code. ChIPSeq
#457 opened Aug 31, 2020 by tovahmarkowitz
miRSeq DE miRSeq
#455 opened Jun 26, 2020 by wong-nw
@wong-nw
scrnaDE scRNASeq
#454 opened Jun 25, 2020 by wong-nw
@wong-nw
scrnaQC_Reports.R: New Rmd for all SingleR annotations scRNASeq
#453 opened Jun 25, 2020 by wong-nw
@wong-nw
scrnaQC.R: Adjust image title and axis-label size scRNASeq
#452 opened Jun 25, 2020 by wong-nw
@wong-nw
Fix glitches with DiffBind analysis ChIPSeq in progress
#442 opened Apr 10, 2020 by tovahmarkowitz
ChIPQC ChIPSeq
#411 opened Mar 8, 2019 by tovahmarkowitz
improve IDR ChIPSeq
#410 opened Mar 8, 2019 by tovahmarkowitz
Delta-delta in contrasts.tab backlog enhancement
#409 opened Mar 8, 2019 by wong-nw
@skchronicles
1
Excel-friendly DEG Result backlog enhancement Feature Request RNASeq
#390 opened Dec 18, 2018 by skchronicles 4.0
@skchronicles
1
fix bam headers ChIPSeq
#384 opened Dec 3, 2018 by tovahmarkowitz
@tovahmarkowitz
Documentation ChIPSeq
#383 opened Dec 3, 2018 by tovahmarkowitz
@tovahmarkowitz
Add SV calling tools exome-seq
#369 opened Nov 14, 2018 by mtandon09 4.0
@mtandon09
Create test datasets ChIPSeq exome-seq RNASeq scRNASeq
#367 opened Nov 14, 2018 by kopardev
@kopardev @jlac
Automate testing enhancement Feature Request
#364 opened Nov 14, 2018 by kopardev
@skchronicles
GSEA enhancement in progress RNASeq
#329 opened Aug 8, 2018 by kopardev
@skchronicles
Covariates backlog enhancement RNASeq
#325 opened Aug 8, 2018 by kopardev
@kopardev @skchronicles
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