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Parse GTF on the fly #462

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kopardev opened this issue Oct 29, 2020 · 1 comment

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RNASeq

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kopardev commented Oct 29, 2020

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kopardev added the RNASeq label

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kopardev commented Oct 29, 2020

Currently index files for 5 different readlengths (overhang) are generated using PIM
Need to change this to:
- One STAR index with just fasta file ... no GTF
- determine overhang on the fly ... based off of mean readlength of current sample
- parse overhang and GTF on the fly to rules STAR1p and STAR2p

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