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Issues list

Question about the [Introduction/Raw data processing 3.8] question Further information is requested
#307 opened Nov 20, 2024 by Wenxi-Zhang
Issue on page /preprocessing_visualization/quality_control.html
#306 opened Nov 12, 2024 by jffpviana
Chapter 16. converting from adata to SingleCellExperiment for adata_mono does not happen. question Further information is requested
#305 opened Nov 11, 2024 by dilkamur
6
Downstream analysis for sn-ATACseq is not shown in the contents? question Further information is requested
#304 opened Nov 10, 2024 by zyll123
Issue on page /conditions/perturbation_modeling.html
#302 opened Nov 4, 2024 by Dexterssssss
Have hide-output and expandable cells enhancement New feature or request
#299 opened Sep 21, 2024 by Zethson
Filter rarely expressed genes/features? question Further information is requested
#298 opened Sep 17, 2024 by kloot
Question about the ambient RNA correction question Further information is requested
#296 opened Aug 22, 2024 by Chaosli98
1
Usage of pvals for volcano plots instead of FDR-corrected p-values question Further information is requested
#295 opened Aug 21, 2024 by ramadatta
SoupX: rowSums(data) : 'x' must be an array of at least two dimensions bug Something isn't working
#294 opened Aug 13, 2024 by Urja25
How can one use an independent reference for training and mapping using scArches? Issue on page /cellular_structure/annotation.html
#293 opened Aug 9, 2024 by yojetsharma
Issue on page /chromatin_accessibility/quality_control.html
#288 opened Jul 25, 2024 by trev-f
@AnnaChristina
Better sorting of pathways in /conditions/gsea_pathway.html?
#287 opened Jul 24, 2024 by VladimirShitov
Update ATAC-seq section with: Benchmarking computational methods for single-cell chromatin data analysis enhancement New feature or request
#286 opened Jul 19, 2024 by ivirshup
@Zethson
1
Issue on page /mechanisms/gene_regulatory_networks.html about env and versions of packages
#285 opened Jul 18, 2024 by franvz9
.dylib files not present in matrixStats (used by scry library)
#281 opened Jun 25, 2024 by as224
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases bug Something isn't working
#278 opened May 28, 2024 by ngvananh2508
Issue on page /preprocessing_visualization/quality_control.html
#275 opened May 17, 2024 by emiliosk
@AnnaChristina
Ambient RNA removal and doublet detection for Smart-seq2 dataset question Further information is requested
#273 opened Apr 26, 2024 by ngvananh2508
cellranger barcodes 3M file URL dead
#272 opened Apr 19, 2024 by chenqiuhao
@Zethson
3
Wrong plot titles in scCODA part bug Something isn't working
#271 opened Apr 19, 2024 by Zethson
@Zethson
Packages compatibility issue when creating an env using preprocessing.yml bug Something isn't working
#270 opened Apr 19, 2024 by inaciomdrs
@AnnaChristina
reach OverflowError in 8. Feature selection
#269 opened Apr 17, 2024 by Zethson
@AnnaChristina
Switch size factor analysis to pyDESeq2
#267 opened Apr 16, 2024 by abearab
@Zethson
2
Create PR preview enhancement New feature or request
#265 opened Apr 6, 2024 by Zethson
ProTip! What’s not been updated in a month: updated:<2024-10-22.