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How can one use an independent reference for training and mapping using scArches? Issue on page /cellular_structure/annotation.html #293

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yojetsharma opened this issue Aug 9, 2024 · 0 comments

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@yojetsharma
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I have my own dataset proceesed using scanpy and another snRNA seq dataset from https://cell.ucsf.edu/snMultiome/ that I plan to use as a reference. From what I understood, I would first need to this train this reference dataset and then map it on the query. But I am not clear how to go about it as the models used in the tutorials are in-built in the pipeline.

@yojetsharma yojetsharma changed the title How can one use an independent reference for training and mapping? Issue on page /cellular_structure/annotation.html How can one use an independent reference for training and mapping using scArches? Issue on page /cellular_structure/annotation.html Aug 9, 2024
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