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Fix meteor test procedure
testing #347: Commit 305667c pushed by aghozlane
November 21, 2024 12:28 3m 12s main
November 21, 2024 12:28 3m 12s
Publish meteor
Publish meteor #60: published by aghozlane
November 21, 2024 11:54 41s
November 21, 2024 11:54 41s
Output module definition and improve taxonomy file
testing #346: Commit 1994d2f pushed by aghozlane
November 21, 2024 11:54 4m 54s 2.0.17
November 21, 2024 11:54 4m 54s
Output module definition and improve taxonomy file
testing #345: Commit 1994d2f pushed by aghozlane
November 21, 2024 10:41 5m 32s main
November 21, 2024 10:41 5m 32s
Fix github actions behavior
testing #344: Commit 9c79343 pushed by aghozlane
November 19, 2024 18:39 3m 14s main
November 19, 2024 18:39 3m 14s
Activate resfinder and resfinderfg annotation
testing #343: Commit 026d42f pushed by aghozlane
November 19, 2024 18:26 2m 46s 2.0.17
November 19, 2024 18:26 2m 46s
Activate resfinder and resfinderfg annotation
testing #342: Commit 026d42f pushed by aghozlane
November 19, 2024 18:20 3m 2s main
November 19, 2024 18:20 3m 2s
Fix issue #56, fix reference builder, fix default parameters in strain.
testing #341: Commit dbe9387 pushed by aghozlane
November 19, 2024 17:13 2m 55s main
November 19, 2024 17:13 2m 55s
Update of catalogues with resfinder and samtools index
testing #340: Commit 18f296f pushed by aghozlane
November 19, 2024 09:27 3m 52s main
November 19, 2024 09:27 3m 52s
Move vcf with shutil instead of rename
testing #339: Commit 621efa9 pushed by aghozlane
November 18, 2024 14:18 3m 44s main
November 18, 2024 14:18 3m 44s
Remove mafft dependencie and fit with best parameters found
testing #338: Commit 22a56a8 pushed by aghozlane
November 4, 2024 11:04 4m 3s main
November 4, 2024 11:04 4m 3s
Fix merging test
testing #337: Commit d80eee3 pushed by aghozlane
October 31, 2024 17:22 5m 12s main
October 31, 2024 17:22 5m 12s
Fix issue #57
testing #336: Commit 3a783c6 pushed by aghozlane
October 31, 2024 17:00 5m 9s main
October 31, 2024 17:00 5m 9s
Fix count testing and fastq import tests
testing #335: Commit b1df6e0 pushed by aghozlane
October 30, 2024 17:02 9m 47s main
October 30, 2024 17:02 9m 47s
Fix bad paired reads importing
testing #334: Commit 5791053 pushed by aghozlane
October 23, 2024 14:38 5m 54s main
October 23, 2024 14:38 5m 54s
Fix mafft dependency
testing #333: Commit 9e9aa89 pushed by aghozlane
October 18, 2024 12:43 5m 59s main
October 18, 2024 12:43 5m 59s
Run multiple alignment with mafft, debug tree construction.
testing #332: Commit 7e0eecd pushed by aghozlane
October 16, 2024 12:07 23s main
October 16, 2024 12:07 23s
Update pysam, perform multiple alignment, activate multiprocessing
testing #331: Commit 10276fa pushed by aghozlane
October 4, 2024 14:17 2m 53s main
October 4, 2024 14:17 2m 53s
Testing advanced strain analysis
testing #330: Commit e12e8c2 pushed by aghozlane
October 1, 2024 15:50 14m 53s main
October 1, 2024 15:50 14m 53s
Activate feather and update all catalogues
testing #329: Commit a4d7cca pushed by aghozlane
September 23, 2024 13:42 2m 47s main
September 23, 2024 13:42 2m 47s
Improve readability
testing #328: Commit d385cf6 pushed by aghozlane
September 6, 2024 13:31 2m 46s main
September 6, 2024 13:31 2m 46s
Setup actions for prerelease
testing #327: Commit e4f8ca1 pushed by aghozlane
September 6, 2024 11:21 2m 35s main
September 6, 2024 11:21 2m 35s
Fix tmp path for variant calling
testing #326: Commit dba43ff pushed by aghozlane
September 6, 2024 08:58 3m 32s main
September 6, 2024 08:58 3m 32s
Fix meteor test
testing #325: Commit a96bba9 pushed by aghozlane
September 5, 2024 14:09 3m 11s main
September 5, 2024 14:09 3m 11s
Update meteor test catalogue
testing #324: Commit 2dbf754 pushed by aghozlane
September 5, 2024 12:45 2m 31s main
September 5, 2024 12:45 2m 31s