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Fix merging test

Fix merging test #337

Workflow file for this run

name: testing
on: [push, pull_request]
jobs:
pytest:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.10", "3.11", "3.12"]
os: [ubuntu-22.04, macos-latest]
steps:
- uses: actions/checkout@v4
- uses: ConorMacBride/install-package@v1
with:
brew: bowtie2 freebayes mafft
apt: bowtie2 freebayes mafft
- name: Install Python
uses: actions/setup-python@v4
- name: Install poetry
uses: abatilo/actions-poetry@v2
- name: Install the project dependencies
run: poetry install --only test -C meteor
- name: Run the automated tests (for example)
run: poetry run -C meteor pytest --cov=meteor --cov-report xml
- name: Upload coverage reports to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: metagenopolis/meteor