Fix mafft dependency

metagenopolis · Oct 18, 2024 · 9e9aa89 · 9e9aa89
1 parent 7e0eecd
commit 9e9aa89
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -13,8 +13,8 @@ jobs:
       - uses: actions/checkout@v4
       - uses: ConorMacBride/install-package@v1
         with:
-          brew: bowtie2 freebayes
-          apt: bowtie2 freebayes
+          brew: bowtie2 freebayes mafft
+          apt: bowtie2 freebayes mafft
       - name: Install Python
         uses: actions/setup-python@v4
       - name: Install poetry

diff --git a/README.md b/README.md
@@ -19,7 +19,7 @@ Besides python packages dependencies, Meteor requires:
 - python 3.10+
 - [bowtie2 2.3.5+](https://github.com/BenLangmead/bowtie2)
 - [freebayes 1.3.6+](https://github.com/freebayes/freebayes)
-- [mafft 7.407+](https://mafft.cbrc.jp/alignment/software/)
+- [mafft 7.487+](https://mafft.cbrc.jp/alignment/software/)
 
 ## Installation
 

diff --git a/conda_recipe/meta.yaml b/conda_recipe/meta.yaml
@@ -39,7 +39,7 @@ requirements:
         - biom-format
         - py-bgzip
         - freebayes >=1.3.6
-        - mafft >=7.407
+        - mafft >=7.487
 test:
     commands:
         - meteor -h

diff --git a/meteor/session.py b/meteor/session.py
@@ -30,7 +30,7 @@ class Component:
 
     MIN_BOWTIE2_VERSION: ClassVar[Version] = Version("2.3.5")
     MIN_FREEBAYES_VERSION: ClassVar[Version] = Version("1.3.6")
-    MIN_MAFFT_VERSION: ClassVar[Version] = Version("7.407")
+    MIN_MAFFT_VERSION: ClassVar[Version] = Version("7.487")
     DEFAULT_GAP_CHAR: ClassVar[str] = "N"
     DEFAULT_CORE_SIZE: ClassVar[int] = 100