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31 Open 10 Closed
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Issues list

Other analysis for Talk2Cells question Further information is requested
#46 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
1
Gene set enrichment analysis of single cell gene expression data enhancement New feature or request
#45 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
Raw data processing pipeline for single cell gene expression data enhancement New feature or request
#44 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
Quantify the proportion of cell types in a tissue or region of interest enhancement New feature or request
#43 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
UMAP visualization of single cell gene expression data. enhancement New feature or request
#42 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
Discovery of new cell annotations from single cell gene expression data enhancement New feature or request
#41 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
Annotation of cells based on single cell gene expression data enhancement New feature or request
#40 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
Search CellxGene metadata to get single cell gene expression data enhancement New feature or request
#39 opened Dec 11, 2024 by dmccloskey Talk2Cells release v1.0.0
1
Utility functions to embed static features with off-the-shelf unimodal foundation models enhancement New feature or request
#38 opened Dec 11, 2024 by dmccloskey
6 tasks
Talk2KnowledgeGraphs release v1.0.0
@awmulyadi
Utility functions to enrich the knowledge graph nodes and edges with static features enhancement New feature or request
#37 opened Dec 11, 2024 by dmccloskey
6 tasks
Talk2KnowledgeGraphs release v1.0.0
@awmulyadi
Migration to LangGraph enhancement New feature or request
#36 opened Dec 5, 2024 by dmccloskey Talk2BioModels release v1.0.0
@gurdeep330
Investigation of unimodal embedding models that can be used from Hugging Face or Nvidia BioNemo documentation Improvements or additions to documentation question Further information is requested
#35 opened Dec 5, 2024 by dmccloskey
5 tasks
Talk2KnowledgeGraphs release v1.0.0
@dmccloskey @gurdeep330 @awmulyadi
Transfer GraphRAG agent and supporting functions to Talk2KnowledgeGraphs enhancement New feature or request
#34 opened Dec 5, 2024 by dmccloskey
6 tasks
Talk2KnowledgeGraphs release v1.0.0
@awmulyadi
Transfer over text embeddings workflows Talk2KnowledgeGraphs enhancement New feature or request
#33 opened Dec 5, 2024 by dmccloskey
6 tasks
Talk2KnowledgeGraphs release v1.0.0
@awmulyadi
Example biomedical knowledge graph for training and benchmarking enhancement New feature or request
#32 opened Dec 5, 2024 by dmccloskey
6 tasks
Talk2KnowledgeGraphs release v1.0.0
@awmulyadi
Create virtual patients to simulate clinical trials using biomodels enhancement New feature or request
#29 opened Nov 27, 2024 by dmccloskey Talk2BioModels release v3.0.0
Size of custom plotting changes when changing browser zoom bug Something isn't working good first issue Good for newcomers
#27 opened Nov 17, 2024 by dmccloskey
Sensitivity analysis of BioModels enhancement New feature or request
#22 opened Nov 7, 2024 by dmccloskey Talk2BioModels release v3.0.0
How should we prioritize computational modelling paradigms for inclusion to Talk2BioModels? question Further information is requested
#21 opened Nov 6, 2024 by dmccloskey Talk2BioModels release v3.0.0
2
Parameter scanning of BioModels enhancement New feature or request
#20 opened Nov 6, 2024 by dmccloskey Talk2BioModels release v3.0.0
2
Steady-state analysis of BioModels enhancement New feature or request
#19 opened Nov 6, 2024 by dmccloskey Talk2BioModels release v3.0.0
AWS deployment of the talk2biomodels application
#18 opened Nov 6, 2024 by dmccloskey Talk2BioModels release v2.0.0
Environments for developing and deploying the app and submodules documentation Improvements or additions to documentation enhancement New feature or request
#16 opened Nov 5, 2024 by dmccloskey Talk2BioModels release v1.0.0
Distribution and installation of submodules documentation Improvements or additions to documentation enhancement New feature or request
#15 opened Nov 5, 2024 by dmccloskey Talk2BioModels release v1.0.0
Improved error messaging from agent and tool calls enhancement New feature or request
#14 opened Nov 5, 2024 by dmccloskey Talk2BioModels release v1.0.0
ProTip! no:milestone will show everything without a milestone.