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Parameter scanning of BioModels #20

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dmccloskey opened this issue Nov 6, 2024 · 2 comments
Open

Parameter scanning of BioModels #20

dmccloskey opened this issue Nov 6, 2024 · 2 comments
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enhancement New feature or request

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@dmccloskey
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dmccloskey commented Nov 6, 2024

As a user, I would like to be able to scan a range of Biomodel parameters. I would like to have a visualization of the results of the parameter scanning to quickly understand the results. I would also like to ask questions of an LLM to better understand the results that may not be obvious from the plot.

Possible solutions

  • Utilize the build in analysis features and plots from basico
  • Utilize a custom plot using a tool call to Matplotlib
@dmccloskey dmccloskey added the enhancement New feature or request label Nov 6, 2024
@lilijap
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lilijap commented Nov 7, 2024

I would recommend to split this issue in two issues, both sensitivity analysis and parameter scan are different tasks with different outputs and visualization approaches, that can be isolated easily. Please let me know your thoughts, @dmccloskey!

@dmccloskey dmccloskey changed the title Parameter scanning and sensitivity analysis of BioModels Parameter scanning of BioModels Nov 7, 2024
@dmccloskey
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@lilijap Thanks for your suggestion. I have updated this comment and made a new issue here for the sensitivity analysis #22. Let me know your thoughts.

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