-
Notifications
You must be signed in to change notification settings - Fork 0
Resources: Classes
This is the page The list of courses helpful for bioinformatics work in this lab.
For people conducting research on the microbiome, I strongly recommend MIBO8700, which detailly explains the history, development, and method under the hood of microbiome analysis.
Applied genome analysis is also another useful class, which cover most analysis bioinformatics student will encounter
Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology by E. STACKEBRANDT and B. M. GOEBEL.
- A paper on early day microbiome classification
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample by E. STACKEBRANDT and B. M. GOEBEL.
- The one of earliest paper on 16S RNA sequencing
- Take Home message: Look at the mutation over time to determine the lineage. 16s is a core ribosome, every cell needs 16s genes. Both stable and variable, not encoding for protein but ribosome
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis by Jethro S. Johnson et.al.
- This paper compared the accuracy of 16S RNA between different primer regions.