Protocols

Template building

Manuscript

A paper describing this is in preparation, a preprint will be available soon.

Image data

Links to all image data can be found at the saalfeld lab resources page.

General Pipeline

Preliminary

1. Lens correct images. Requires confocal-lens repo.
2. Stitch images
3. Downsample ( and optionally reorient )
4. Groupwise register
5. Render template at high resolution

Evaluation

Examples

• Drosophila brain template
• Drosophila ventral nerve cord template