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FAFB Bridge
John Bogovic edited this page Dec 18, 2018
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The transformation is available for download on Janelia's open science page.
We've converted the transform to a cmtk-compatible nrrd format for use with the NeuroAnatomy Toolbox (nat).
To convert an image in FAFB space to JRC2018:
reformatx -o <output> --floating <fafb_img> <jrc2018> JRC2018F_FAFB_Warp_cmtk.nrrd JRC2018F_FAFB_Affine_cmtk
To convert an image in JRC2018 space to FAFB space:
reformatx -o <output> --floating <fafb_img> <jrc2018> -i JRC2018F_FAFB_Affine_cmtk JRC2018F_FAFB_InverseWarp_cmtk.nrrd
To transform points from FAFB space to JRC2018 space.
streamxform -i JRC2018F_FAFB_Affine_cmtk JRC2018F_FAFB_InverseWarp_cmtk.nrrd < <fafb_points>