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Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 163 22

  2. paintera paintera Public

    Java 100 17

  3. render render Public

    Render transformed image tiles

    Java 34 32

  4. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 9

  5. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 27 14

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 18 11

Repositories

Showing 10 of 106 repositories
  • render Public

    Render transformed image tiles

    saalfeldlab/render’s past year of commit activity
    Java 34 GPL-2.0 32 29 5 Updated Oct 31, 2024
  • i2k2024-lazy-workshop Public

    I2K2024 workshop - Lazy Parallel Processing and Visualization of Large Data with ImgLib2, BigDataViewer, the N5-API, and Spark

    saalfeldlab/i2k2024-lazy-workshop’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 0 0 0 Updated Oct 30, 2024
  • bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    saalfeldlab/bigwarp’s past year of commit activity
    Java 27 GPL-2.0 14 38 2 Updated Oct 30, 2024
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij’s past year of commit activity
    Java 15 BSD-2-Clause 11 21 (1 issue needs help) 1 Updated Oct 30, 2024
  • diffusion-experiments Public
    saalfeldlab/diffusion-experiments’s past year of commit activity
    Python 0 0 0 0 Updated Oct 25, 2024
  • paintera Public
    saalfeldlab/paintera’s past year of commit activity
    Java 100 GPL-2.0 17 71 (12 issues need help) 2 Updated Oct 21, 2024
  • n5 Public

    Not HDF5

    saalfeldlab/n5’s past year of commit activity
    Java 163 BSD-2-Clause 22 14 4 Updated Oct 17, 2024
  • fly-organelles Public
    saalfeldlab/fly-organelles’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 16, 2024
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr’s past year of commit activity
    Java 12 BSD-2-Clause 14 4 4 Updated Oct 15, 2024
  • cellmap-utils-kit Public

    Collection of various utilities for cellmap data including data preparation scripts, functions to extract info from attributes etc

    saalfeldlab/cellmap-utils-kit’s past year of commit activity
    Python 0 MIT 0 2 4 Updated Oct 10, 2024
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