Handling Bad Kmers

This section explains how to handle bad k-mers during counting.

# Example Python code

Installing Oxli
Basic Setup
For Developers

Getting Started
Getting Started

Counting Kmers
Basic Counting
Extracting from Files
Handling Bad Kmers

Looking up Counts
Single Kmer Lookup
Multiple Kmer Lookup

Removing Records Remove Kmers Abundance Filtering

Exploring Count Tables
Iterating Records
Attributes

Set Operations
Basic SetOps

Exporting Data
Histo: Export Frequency Counts
Dump: Write Hash:Count Pairs
Save and Load KmerCountTables

F.A.Q
Frequently Asked Questions

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