-
Notifications
You must be signed in to change notification settings - Fork 0
Basic Setup
Adam Taranto edited this page Sep 18, 2024
·
2 revisions
Oxli is available on conda-forge for Linux, Mac OS X, and Windows for Python versions 3.10, 3.11, and 3.12:
conda install oxliFor the latest development version see instructions for developers.
Installing Oxli
Basic Setup
For Developers
Getting Started
Getting Started
Counting Kmers
Basic Counting
Extracting from Files
Handling Bad Kmers
Looking up Counts
Single Kmer Lookup
Multiple Kmer Lookup
Removing Records Remove Kmers Abundance Filtering
Exploring Count Tables
Iterating Records
Attributes
Set Operations
Basic SetOps
Exporting Data
Histo: Export Frequency Counts
Dump: Write Hash:Count Pairs
Save and Load KmerCountTables