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    9 repositories

    • TEsmall

      Public
      A pipeline for profiling TE-derived small RNAs
      Python
      •
      GNU General Public License v3.0
      •5•6•4•0•Updated Nov 26, 2024Nov 26, 2024

    • DANCer

      Public
      Code for (sc)DANCer
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • TEtranscripts

      Public
      A package for including transposable elements in differential enrichment analysis of sequencing datasets.
      Python
      •
      GNU General Public License v3.0
      •31•237•3•0•Updated Oct 24, 2024Oct 24, 2024

    • ASAP_CRN_data_analysis_scripts

      Public
      Scripts used in data analysis for ASAP CRN projects
      Shell
      •
      MIT License
      •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

    • TElocal

      Public
      A package for quantifying transposable elements at a locus level for RNAseq datasets.
      Python
      •
      GNU General Public License v3.0
      •8•24•8•0•Updated Aug 23, 2024Aug 23, 2024

    • CellRangerTE

      Public
      Script to create a Cell Ranger reference database that can quantify transposable elements.
      Shell
      •
      GNU General Public License v3.0
      •0•6•1•0•Updated Aug 23, 2024Aug 23, 2024

    • TEpeaks

      Public
      Package for including repetitive regions in peak calling from ChIP-seq datasets
      C
      •
      GNU General Public License v3.0
      •4•9•5•0•Updated Aug 14, 2023Aug 14, 2023

    • tetoolkit-test-data

      Public
      Github ultra compressed version of data needed by TEtranscripts
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 4, 2019Nov 4, 2019

    • ezBAMQC

      Public
      NGS data alignment file QC Package
      C
      •0•7•3•0•Updated Jun 2, 2016Jun 2, 2016