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    386 repositories

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •2•6•0•0•Updated Oct 7, 2024Oct 7, 2024

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •19•55•9•2•Updated Oct 7, 2024Oct 7, 2024

    • trusted-intermediary

      Public
      Bringing together healthcare providers by reducing the connection burden.
      Groovy
      •
      Apache License 2.0
      •5•10•149•1•Updated Oct 7, 2024Oct 7, 2024

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •54•57•358•17•Updated Oct 6, 2024Oct 6, 2024

    • Rt-without-renewal

      Public
      Julia
      •
      Apache License 2.0
      •3•17•69•7•Updated Oct 6, 2024Oct 6, 2024

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •39•71•1.3k•119•Updated Oct 6, 2024Oct 6, 2024

    • ixa

      Public
      Rust
      •
      Apache License 2.0
      •0•5•9•8•Updated Oct 5, 2024Oct 5, 2024

    • RecordLinker

      Public
      Python
      •
      Apache License 2.0
      •0•1•14•1•Updated Oct 5, 2024Oct 5, 2024

    • phdi

      Public
      fhir
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •14•34•219•14•Updated Oct 5, 2024Oct 5, 2024

    • cfa_azure

      Public
      Python
      •
      Apache License 2.0
      •2•9•16•2•Updated Oct 5, 2024Oct 5, 2024

    • data-exchange-processing-status

      Public
      Kotlin
      •
      Apache License 2.0
      •0•1•1•4•Updated Oct 5, 2024Oct 5, 2024

    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      pythondockermetadatabioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing
      Python
      •
      Apache License 2.0
      •7•24•14•0•Updated Oct 4, 2024Oct 4, 2024

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 hospitalizations using wastewater data with PyRenew
      R
      •
      Apache License 2.0
      •0•3•9•2•Updated Oct 4, 2024Oct 4, 2024

    • dibbs-product-demos

      Public
      HTML
      •
      Apache License 2.0
      •0•1•1•7•Updated Oct 4, 2024Oct 4, 2024

    • cfa-viral-lineage-model

      Public
      Python
      •
      Apache License 2.0
      •0•10•12•6•Updated Oct 4, 2024Oct 4, 2024

    • ReportVision

      Public
      Intelligent Data Workflow Automation
      TypeScript
      •
      Apache License 2.0
      •1•1•37•4•Updated Oct 4, 2024Oct 4, 2024

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •16•34•0•13•Updated Oct 4, 2024Oct 4, 2024

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecast data for the weekly new COVID-19 hospitalizations.
      Apache License 2.0
      •1•1•2•1•Updated Oct 4, 2024Oct 4, 2024

    • forecasttools-py

      Public
      A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.
      infrastructureautomationabstractionforecastinginfectious-disease-modeling
      Python
      •
      Apache License 2.0
      •0•1•3•1•Updated Oct 4, 2024Oct 4, 2024

    • data-exchange-upload

      Public
      Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      Go
      •
      Apache License 2.0
      •3•7•42•16•Updated Oct 4, 2024Oct 4, 2024

    • reportstream-sftp-ingestion

      Public
      Go
      •
      Apache License 2.0
      •0•5•0•0•Updated Oct 4, 2024Oct 4, 2024

    • data-exchange-fhir

      Public
      Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      C#
      •
      Apache License 2.0
      •1•10•157•0•Updated Oct 4, 2024Oct 4, 2024

    • cfa-config-validation

      Public
      Modeling pipeline config validation microservice.
      Python
      •
      Apache License 2.0
      •0•0•1•1•Updated Oct 4, 2024Oct 4, 2024

    • NEDSS-Infrastructure

      Public
      HCL
      •
      Apache License 2.0
      •0•2•0•0•Updated Oct 4, 2024Oct 4, 2024

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •0•0•0•1•Updated Oct 4, 2024Oct 4, 2024

    • NEDSS-Modernization

      Public
      Java
      •2•17•0•6•Updated Oct 4, 2024Oct 4, 2024

    • lib-cloud-proxy-go

      Public
      Go
      •0•1•0•1•Updated Oct 4, 2024Oct 4, 2024

    • phinvads-go

      Public
      A complete rewrite of CDC's vocabulary management service, PHIN VADS, in Go.
      golangtemplhtmxphinvadsvads
      Go
      •0•2•8•2•Updated Oct 4, 2024Oct 4, 2024

    • data-exchange

      Public
      Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      data-exchangehl7v2
      Apache License 2.0
      •0•3•1•1•Updated Oct 4, 2024Oct 4, 2024

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •1•2•0•4•Updated Oct 4, 2024Oct 4, 2024