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    411 repositories

    • ReportVision

      Public
      Intelligent Data Workflow Automation
      TypeScript
      •
      Apache License 2.0
      •2•1•47•3•Updated Dec 11, 2024Dec 11, 2024

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •53•58•381•23•Updated Dec 11, 2024Dec 11, 2024

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •0•5•51•5•Updated Dec 11, 2024Dec 11, 2024

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •40•73•1.2k•129•Updated Dec 11, 2024Dec 11, 2024

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •0•1•11•2•Updated Dec 11, 2024Dec 11, 2024

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •1•2•0•8•Updated Dec 11, 2024Dec 11, 2024

    • phdi

      Public
      fhir
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •14•35•223•9•Updated Dec 11, 2024Dec 11, 2024

    • NEDSS-Modernization

      Public
      Java
      •2•18•0•6•Updated Dec 11, 2024Dec 11, 2024

    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      •
      Apache License 2.0
      •0•5•32•3•Updated Dec 11, 2024Dec 11, 2024

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecast data for the weekly new COVID-19 hospitalizations.
      R
      •
      Apache License 2.0
      •9•7•14•4•Updated Dec 11, 2024Dec 11, 2024

    • forecasttools

      Public
      R tools for short-term forecasting
      R
      •
      Apache License 2.0
      •0•3•9•2•Updated Dec 11, 2024Dec 11, 2024

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •0•0•0•4•Updated Dec 11, 2024Dec 11, 2024

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •18•60•10•2•Updated Dec 11, 2024Dec 11, 2024

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •0•3•14•4•Updated Dec 11, 2024Dec 11, 2024

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •1•2•0•0•Updated Dec 10, 2024Dec 10, 2024

    • reportstream-sftp-ingestion

      Public
      Go
      •
      Apache License 2.0
      •0•5•0•0•Updated Dec 10, 2024Dec 10, 2024

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •0•4•42•5•Updated Dec 10, 2024Dec 10, 2024

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •2•6•0•0•Updated Dec 10, 2024Dec 10, 2024

    • MIRA-NF

      Public
      Nextflow
      •
      MIT License
      •1•3•0•0•Updated Dec 10, 2024Dec 10, 2024

    • dibbs-azure

      Public
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•1•Updated Dec 10, 2024Dec 10, 2024

    • NEDSS-DataIngestion

      Public
      Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      •
      Apache License 2.0
      •2•6•0•3•Updated Dec 10, 2024Dec 10, 2024

    • clean-genes

      Public
      A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.
      data-sciencebioinformaticsfastadata-normalizationdata-cleaningsequence-alignmentsequence-analysissequence-annotationncirdncird-id
      Rust
      •
      Apache License 2.0
      •0•1•0•0•Updated Dec 10, 2024Dec 10, 2024

    • ww-inference-model

      Public
      An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
      forecastingbayesian-inferencestanhierarchical-modelsreal-time-analyticscmdstanrwastewater-based-epidemiology
      R
      •
      Apache License 2.0
      •2•21•74•3•Updated Dec 10, 2024Dec 10, 2024

    • Rnssp-shiny-apps

      Public
      Rnssp Shiny Apps are custom-built applications with seamless integration to the Rnssp R package.
      shinyshiny-appscdcessencensspessence-apinssp-cop
      R
      •
      Apache License 2.0
      •4•6•4•0•Updated Dec 10, 2024Dec 10, 2024

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •19•35•0•2•Updated Dec 10, 2024Dec 10, 2024

    • abm-python-wrappers

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Dec 10, 2024Dec 10, 2024

    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      pythondockermetadatabioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing
      Python
      •
      Apache License 2.0
      •7•27•21•1•Updated Dec 10, 2024Dec 10, 2024

    • dibbs-site

      Public
      JavaScript
      •1•1•0•8•Updated Dec 10, 2024Dec 10, 2024

    • cfa-gam-rt

      Public
      R package for real-time Rt estimation with penalized splines
      R
      •
      Apache License 2.0
      •1•13•22•0•Updated Dec 10, 2024Dec 10, 2024

    • NEDSS-Infrastructure

      Public
      HCL
      •
      Apache License 2.0
      •0•2•0•0•Updated Dec 10, 2024Dec 10, 2024