Skip to content

Issues: CDCgov/tostadas

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

23 Open 101 Closed
23 Open 101 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[Internal] [Bug] UnboundLocalError: local variable 'sra_submission' referenced before assignment bug Something isn't working
#231 opened Dec 11, 2024 by jessicarowell
1 task done
v4.1.0
@jessicarowell
[Internal] [Bug] "DataFrame columns are not unique" in BioSample bug Something isn't working
#230 opened Dec 11, 2024 by jessicarowell
1 task done
v4.1.0
@jessicarowell
[Internal] [Feature] Support for GEO submissions enhancement New feature or request
#229 opened Dec 9, 2024 by jessicarowell
1 task done
v4.2.0
@jessicarowell
[Internal] [Bug] 'Not a valid path value:' for relative paths on command line bug Something isn't working
#227 opened Dec 9, 2024 by jessicarowell
1 task done
v4.1.0
@jessicarowell
Bug: Discrepancies in nextflow.config and test.config Files bug Something isn't working
#226 opened Dec 9, 2024 by RamiyapriyaS v4.1.0
1
@RamiyapriyaS
[External] [Bug] Pandas 'host_age' KeyError in Test Profile bug Something isn't working
#225 opened Nov 29, 2024 by nrminor
1 of 3 tasks
[Internal] [Bug] Conda on Scicomp: Issue with cache clearing bug Something isn't working
#224 opened Nov 22, 2024 by RamiyapriyaS
1
@RamiyapriyaS
[Internal] [Feature] Fix tests (for Github Actions) enhancement New feature or request
#220 opened Nov 14, 2024 by jessicarowell v4.1.0
@jessicarowell
[Internal] [Feature] Incorporate AST and other optional bacteria BioSample attributes to submission.xml enhancement New feature or request
#219 opened Nov 14, 2024 by jessicarowell
1 task done
v4.1.0
1
@jessicarowell
[Internal] [Bug] Table2asn error on test data user-provided annotations: duplicate Bioseq id bug Something isn't working
#217 opened Nov 13, 2024 by jessicarowell
1 task done
v4.1.0
[Internal] [Bug] Conda environment on scicomp: RepeatMasker::createLib(): Error bug Something isn't working
#216 opened Nov 12, 2024 by jessicarowell
1 task done
v4.1.0
1
@jessicarowell
[Internal] [Feature] Refactor to bulk-submit samples enhancement New feature or request
#213 opened Nov 8, 2024 by jessicarowell v4.1.0
@jessicarowell
[Internal] [Bug] Implement logging after the batch submission code is written bug Something isn't working
#212 opened Nov 7, 2024 by jessicarowell
1 task done
v4.2.0
@jessicarowell
[Internal] [Feature] Write a new update_submission.py script enhancement New feature or request
#211 opened Nov 7, 2024 by jessicarowell
1 task done
v4.0.0
@jessicarowell
[Internal] [Bug] Nextflow version 24.04.2 and nextflow.config tower configuration incompatibility bug Something isn't working
#210 opened Nov 7, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Feature] Cloud support for submissions enhancement New feature or request
#204 opened Oct 4, 2024 by jessicarowell
1 task done
v4.2.0
@jessicarowell
[External] [Bug] CWE-798 Security Vulnerability - Plain Text Password bug Something isn't working
#202 opened Oct 1, 2024 by thomasphung
1 task done
[Internal] [Feature] Make these custom field validations "smarter" enhancement New feature or request
#198 opened Apr 11, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Bug] Won't accept any 'dots' in sample file names bug Something isn't working
#173 opened Feb 28, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Feature] Refactor to support nanopore data enhancement New feature or request
#172 opened Feb 28, 2024 by jessicarowell
1 task done
@jessicarowell
[Internal] [Feature] Migrate to nf-core params validation enhancement New feature or request
#143 opened Jan 31, 2024 by kyleoconnell
1 task done
[Internal] [Test] Add Separate CI For Dev Branch implement testing
#89 opened Dec 6, 2023 by ankushkgupta2
1 task done
@ankushkgupta2
1
[Internal] [Feature] Add Singularity to C/I enhancement New feature or request testing
#56 opened Jun 22, 2023 by ankushkgupta2
1 task done
@ankushkgupta2
ProTip! Mix and match filters to narrow down what you’re looking for.