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10 Open 49 Closed
10 Open 49 Closed
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Issues list

Considering Bakta for genome annotation - requested enhancement
#177 opened Dec 2, 2024 by vascokarla
Blank qc_outcome column
#174 opened Aug 4, 2024 by bajwamoneeb
@jvhagey
1
[BUG] - create_samplesheet.sh file is no longer available Enhancement New feature or request
#170 opened Jun 7, 2024 by snallani-msdh
@jvhagey
1
Refactor failed summary handling Low Severity Bug: Universal Something isn't working, but not wrong or killing pipeline
#152 opened Apr 4, 2024 by slsevilla
@jvhagey
1
Move params checks upstream to main.nf
#151 opened Apr 1, 2024 by slsevilla
1
handle failed samples via filtering
#147 opened Mar 28, 2024 by slsevilla
1 task
1
[BUG] - Resume flag restarts pipeline at SPADES, even if pipeline has completed downstream steps Low Severity Bug: Universal Something isn't working, but not wrong or killing pipeline
#129 opened Jan 20, 2024 by slsevilla
2
Create message/output when downstream and QC analysis is not complete or is interrupted due to taxa not assigned (taxa is not bacterial) Enhancement New feature or request
#123 opened Oct 2, 2023 by MOREYCK
@jvhagey
1
pigz error in PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK process on GCP VM Bug: System Specific Something isn't working, specific to certain systems
#120 opened Aug 18, 2023 by kprus
@jvhagey
6
Singe-end analysis - requested enhancement Enhancement New feature or request
#87 opened Feb 20, 2023 by AroobAlhumaidy
1
ProTip! Exclude everything labeled bug with -label:bug.