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revise mandatory
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@xiaoranzhou
xiaoranzhou committed Apr 15, 2024
1 parent 5d92426 commit 7ffc09a
Showing 1 changed file with 16 additions and 13 deletions.
29 changes: 16 additions & 13 deletions index.html
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Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@
}
</style>
</head>
<body class="d-grid gap-5" style="background: rgb(45, 62, 80, 0.2); " >
<body class="d-grid gap-3" style="background: rgb(45, 62, 80, 0.2); " >
<script>
var spreadsheet;
var ENAsample, ENAsequence, ENAread, samplesChecklist, dataAnalysesChecklist, checklistNo ;
Expand Down Expand Up @@ -266,7 +266,7 @@
<tr>
<th scope="col">Term Name</th>
<th scope="col">Term Type</th>
<th scope="col">Mandatory</th>
<th scope="col">Requirement</th>
<th scope="col">Ontology</th>
<th scope="col">Export</th>
</tr>
Expand Down Expand Up @@ -346,13 +346,13 @@
if (uniqueList[element2.name][1] == element2.description){

}else {
console.log("term exists but the descriptions are not the same. previous description is: "+uniqueList[element2.name][1]+"\n current is: "+ element2.description)
console.log("term ---"+element2.label +" ---exists but the descriptions are not the same. previous description is: "+uniqueList[element2.name][1]+"\n current is: "+ element2.description)
}

} catch (error) {
var newRow = [element2.label, element2.description, element2.mandatory, element2.label ];
uniqueList[element2.name] = newRow;
console.log("added dict: "+ uniqueList[element2.name]);
//console.log("added dict: "+ uniqueList[element2.name]);
csv += newRow[0]+"\t"+newRow[1]+"\t"+newRow[2]+"\n";
}

Expand All @@ -366,6 +366,7 @@
function listXMLFields(id1){
var uniqueList = {}
var tsv = "";
var tsvCompare = "";
const checklists = ENAall[id1].evaluate(
"//CHECKLIST",
ENAall[id1],
Expand All @@ -392,21 +393,23 @@
if (uniqueList[name][1] == description){

}else {
console.log("term exists but the descriptions are not the same. previous description is: "+uniqueList[name][1]+"\n current is: "+ description)
}
console.log("term in ---"+label +" --- exists but the descriptions are not the same. previous description is: "+uniqueList[name][1]+"\n current is: "+ description)
tsvCompare += uniqueList[name][0]+"\t"+uniqueList[name][3]+"\t"+uniqueList[name][1]+"\t"+checkid+ "\t" + description+"\n";
}

} catch (error) {

var newRow = [label, description, mandatory, id1+":"+checkid];
uniqueList[name] = newRow;
console.log("added dict: "+ uniqueList[name]);
//console.log("added dict: "+ uniqueList[name]);
tsv += newRow[0]+"\t"+newRow[1]+"\t"+newRow[2]+"\t"+newRow[3]+"\n";
}

}
list1 = checklists.iterateNext();
}
window.location.href = "data:text/tab-separated-values," + encodeURIComponent(tsv);
window.location.href = "data:text/tab-separated-values," + encodeURIComponent(tsvCompare);
return tsv;
}

Expand Down Expand Up @@ -545,14 +548,14 @@
<h2>Generate SWATE template from ENA checklists </h2>
<h6>ENA has three checklist types, namely samples, raw reads and data analyses. By search and selecting a checklist, a Swate template can be created. </h6>
<div class="col-8">
<div class="row mb-3" id="row1">
<div class="row mb-5" id="row1">
<h4> Samples </h4>
<div class="input-group mb-3 " >
<div id="samplesColumn"> not fetched</div>
<div class="input-group-text">
<div class="form-check form-switch">
<input class="form-check-input" type="checkbox" id="sampleM" name="sampleCheck" role="switch" value="mandatory" aria-label="Radio button for previous datalist" checked>
<label class="form-check-label" for="sampleM" >Requirement&nbsp;</label>
<label class="form-check-label" for="sampleM" >Mandatory&nbsp;</label>
</div>
<div class="form-check form-switch">
<input class="form-check-input" type="checkbox" id="sampleR" name="sampleCheck" role="switch" value="recommended" aria-label="Radio button for previous datalist">
Expand All @@ -571,14 +574,14 @@ <h4> Samples </h4>
</div>
</div>
</div>
<div class="row mb-3" id="row2">
<div class="row mb-5" id="row2">
<h4> Raw Reads </h4>
<div class="input-group mb-3" >
<div id="rawReadsColumn"> not fetched</div>
<div class="input-group-text">
<div class="form-check form-switch">
<input class="form-check-input" type="checkbox" id="rawReadsM" name="rawReadsCheck" role="switch" value="mandatory" aria-label="Radio button for previous datalist" checked>
<label class="form-check-label" for="rawReadsM" >Requirement&nbsp;</label>
<label class="form-check-label" for="rawReadsM" >Mandatory&nbsp;</label>
</div>

<div class="form-check form-switch">
Expand All @@ -594,14 +597,14 @@ <h4> Raw Reads </h4>
</div>
</div>
</div>
<div class="row mb-3" id="row3">
<div class="row mb-5" id="row3">
<h4> Data Analyses </h4>
<div class="input-group mb-3 " >
<div id="dataAnalysesColumn"> not fetched</div>
<div class="input-group-text">
<div class="form-check form-switch">
<input class="form-check-input" type="checkbox" id="dataAnalysesM" name="dataAnalysesCheck" role="switch" value="mandatory" aria-label="Radio button for previous datalist" checked>
<label class="form-check-label" for="dataAnalysesM" >Requirement&nbsp;</label>
<label class="form-check-label" for="dataAnalysesM" >Mandatory&nbsp;</label>
</div>

<div class="form-check form-switch">
Expand Down

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