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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 9 6

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 2 3

  3. ARC-specification ARC-specification Public

    12 13

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 32 6

  5. ARCtrl ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 17 8

  6. dataplan dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    HTML 4 8

Repositories

Showing 10 of 84 repositories
  • nfdi4plants.github.io Public

    DataPLANT static website using Fornax

    nfdi4plants/nfdi4plants.github.io’s past year of commit activity
    Astro 4 MIT 13 1 0 Updated Nov 22, 2024
  • ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 17 MIT 8 37 (1 issue needs help) 3 Updated Nov 22, 2024
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 32 MIT 6 21 1 Updated Nov 22, 2024
  • Swobup Public

    Swate DB update tool

    nfdi4plants/Swobup’s past year of commit activity
    JavaScript 5 GPL-3.0 1 3 0 Updated Nov 22, 2024
  • dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    nfdi4plants/dataplan’s past year of commit activity
    HTML 4 GPL-3.0 8 21 0 Updated Nov 22, 2024
  • nfdi4plants.knowledgebase Public

    This is the source repo for the nfdi4plants knowledge base webpage.

    nfdi4plants/nfdi4plants.knowledgebase’s past year of commit activity
    MDX 2 CC-BY-4.0 32 3 2 Updated Nov 22, 2024
  • BOAT-Builder-for-Ontology-ARC-Templates Public

    This tool/website is for a user friendly creating of an ARC template (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.

    nfdi4plants/BOAT-Builder-for-Ontology-ARC-Templates’s past year of commit activity
    F# 2 0 7 0 Updated Nov 21, 2024
  • arcmanager_backend Public

    FastAPI backend for the ARCmanager.

    nfdi4plants/arcmanager_backend’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Nov 21, 2024
  • arcmanager_frontend Public

    Web-based application for creating and managing your ARCs directly on the DataHUB.

    nfdi4plants/arcmanager_frontend’s past year of commit activity
    Vue 0 AGPL-3.0 0 1 0 Updated Nov 21, 2024
  • nfdi4plants_ontology Public

    An intermediate ontology for plants used by DataPLANT to fill the ontology gap

    nfdi4plants/nfdi4plants_ontology’s past year of commit activity
    F# 7 MIT 10 4 0 Updated Nov 20, 2024