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Add glycosylation annotation to B/Yam results #99

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Add glycosylation annotation to B/Yam results #99

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dc1483a
Add glycosylation annotation to B/Yam results
huddlej Nov 6, 2023
ebb0f0a
Add note to Yam changelog
huddlej Nov 6, 2023
36c2034
chore: rebuild [skip ci]
nextstrain-bot Nov 6, 2023
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2 changes: 2 additions & 0 deletions data/nextstrain/flu/yam/ha/JN993010/CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,5 @@ Initial release for Nextclade v3!
This dataset is converted from the corresponding older dataset for Nextclade v2. You can find old versions of datasets here: https://github.com/nextstrain/nextclade_data/tree/2023-08-17--15-51-24--UTC/data/datasets

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

- Adds glycosylation annotation to alignment results
25 changes: 25 additions & 0 deletions data/nextstrain/flu/yam/ha/JN993010/pathogen.json
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Original file line number Diff line number Diff line change
@@ -1,4 +1,29 @@
{
"aaMotifs": [
{
"description": "N-linked glycosylation motifs (N-X-S/T with X any amino acid other than P)",
"includeGenes": [
{
"gene": "HA1"
},
{
"gene": "HA2",
"ranges": [
{
"begin": 0,
"end": 186
}
]
}
],
"motifs": [
"N[^P][ST]"
],
"name": "glycosylation",
"nameFriendly": "Glycosylation",
"nameShort": "Glyc."
}
],
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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3 changes: 3 additions & 0 deletions data_output/index.json
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Original file line number Diff line number Diff line change
Expand Up @@ -767,6 +767,9 @@
"mixedSites",
"privateMutations",
"stopCodons"
],
"other": [
"aaMotifs"
]
},
"versions": [
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2 changes: 2 additions & 0 deletions data_output/nextstrain/flu/yam/ha/JN993010/unreleased/CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,5 @@ Initial release for Nextclade v3!
This dataset is converted from the corresponding older dataset for Nextclade v2. You can find old versions of datasets here: https://github.com/nextstrain/nextclade_data/tree/2023-08-17--15-51-24--UTC/data/datasets

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

- Adds glycosylation annotation to alignment results
25 changes: 25 additions & 0 deletions data_output/nextstrain/flu/yam/ha/JN993010/unreleased/pathogen.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,29 @@
{
"aaMotifs": [
{
"description": "N-linked glycosylation motifs (N-X-S/T with X any amino acid other than P)",
"includeGenes": [
{
"gene": "HA1"
},
{
"gene": "HA2",
"ranges": [
{
"begin": 0,
"end": 186
}
]
}
],
"motifs": [
"N[^P][ST]"
],
"name": "glycosylation",
"nameFriendly": "Glycosylation",
"nameShort": "Glyc."
}
],
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
Expand Down