Add glycosylation annotation to B/Yam results #99
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Adds the same amino acid motifs entry from the three other seasonal flu lineages to B/Yam, so users can see changes in glycosylation sites in Nextclade results. The motif for B/Yam is the same as the motif for other lineages [1]. These annotations most likely did not get included in the original addition of glycosylation sites [2] because we suspected Yam was already extinct. These annotations should be helpful for researchers performing retrospective analyses, though. [1] https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6328934/#sec3title [2] #64
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Thanks, John! @huddlej Technically seems to be working well: But I cannot check the accuracy of science. Feel free to merge or check with Richard first, depending on how confident you are in the results :) |
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Thanks for the test link, @ivan-aksamentov! I'm 99.99% confident about the science, but I can wait for a 👍🏻 from @rneher just to be safe. |
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this got integrated in the new workflow. Thanks @huddlej ! |
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Description of proposed changes
Adds the same amino acid motifs entry from the three other seasonal flu lineages to B/Yam, so users can see changes in glycosylation sites in Nextclade results. The motif for B/Yam is the same as the motif for other lineages. These annotations most likely did not get included in the original addition of glycosylation sites because we suspected Yam was already extinct. These annotations should be helpful for researchers performing retrospective analyses, though.
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