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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 129

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 292 162

Repositories

Showing 10 of 90 repositories
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 292 AGPL-3.0 162 235 (4 issues need help) 50 Updated Oct 26, 2024
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 2 0 10 0 Updated Oct 25, 2024
  • norovirus Public
    nextstrain/norovirus’s past year of commit activity
    Python 0 MIT 0 4 1 Updated Oct 25, 2024
  • ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,353 MIT 403 71 23 Updated Oct 25, 2024
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 44 26 27 3 Updated Oct 25, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 129 235 (1 issue needs help) 57 Updated Oct 25, 2024
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base’s past year of commit activity
    Shell 12 6 12 4 Updated Oct 25, 2024
  • nipah Public
    nextstrain/nipah’s past year of commit activity
    Python 0 0 2 1 Updated Oct 25, 2024
  • seasonal-cov Public

    Nextstrain build for seasonal coronaviruses

    nextstrain/seasonal-cov’s past year of commit activity
    Python 1 0 2 1 Updated Oct 25, 2024
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 10 Updated Oct 25, 2024
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