Adjust Nextclade to Auspice 2.61+ #1946

Job	Run time
Run 'builder-docker-image.yml' workflow / Build base image	3m 59s
Run unit tests	10m 22s
Run lints	8m 7s
Build CLI (aarch64-apple-darwin)	9m 19s
Build CLI (aarch64-unknown-linux-gnu)	9m 42s
Build CLI (aarch64-unknown-linux-musl)	8m 28s
Build CLI (x86_64-apple-darwin)	11m 14s
Build CLI (x86_64-pc-windows-gnu)	9m 23s
Build CLI (x86_64-unknown-linux-gnu)	10m 40s
Build CLI (x86_64-unknown-linux-musl)	8m 38s
Run smoke tests (linux)	2m 48s
Run Linux distros compatibility test	1m 11s
Check that autogenerated CLI documentation is up-to-date	14s
Publish to Docker Hub	0s
Publish to GitHub Releases	0s
	1h 34m 5s

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