Skip to content

Version 1.1.0

Pre-release
Pre-release
Compare
Choose a tag to compare
@talithaforcier talithaforcier released this 10 Aug 02:45
· 22 commits to master since this release
1.1.0
db03ec9

Changes

  • Added Python 3 compatibility
  • Removed gtf format input for TE annotations, which removed a holdover behavior where subfamily-level clustering was being done if not using a prebuilt index for TEs
    • Thanks to Savytska Natalia for spotting that
  • Streamlined and removed unused code inherited from TEtranscripts
  • Updated the --stranded parameter to utilize forward instead of yes for stranded libraries sequenced in the direction of transcribed RNA.

Minor changes

  • Minor fixes to read apportioning
  • Minor fixes to correctly handle SAM as input
  • Minor fixes to features list when running on unstranded libraries
  • Allow --verbose to be invoked without arguments
Assets 2
Loading