Zenodo release

• No changes from version 1.1.1

Version 1.1.1

Minor change

• fixed bug causing error in building gene index
  • Thanks to whiteorchid for pointing this out in issue #9

Version 1.1.0

Changes

• Added Python 3 compatibility
• Removed gtf format input for TE annotations, which removed a holdover behavior where subfamily-level clustering was being done if not using a prebuilt index for TEs
  • Thanks to Savytska Natalia for spotting that
• Streamlined and removed unused code inherited from TEtranscripts
• Updated the --stranded parameter to utilize forward instead of yes for stranded libraries sequenced in the direction of transcribed RNA.

Minor changes

• Minor fixes to read apportioning
• Minor fixes to correctly handle SAM as input
• Minor fixes to features list when running on unstranded libraries
• Allow --verbose to be invoked without arguments