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Pull requests: loculus-project/loculus
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chore(kubernetes): migrate away from deprecated env variable names
#3355
opened Dec 3, 2024 by
corneliusroemer
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2 tasks
chore(deps): disable unupgradable deps in dependabot.yaml
#3352
opened Dec 3, 2024 by
corneliusroemer
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Update error schema with input and output metadata field names
preview
Triggers a deployment to argocd
#3348
opened Dec 3, 2024 by
anna-parker
•
Draft
1 task
[DO NOT MERGE] WISE Sequences instance test
preview
Triggers a deployment to argocd
#3330
opened Dec 2, 2024 by
chaoran-chen
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Draft
feat(deposition): Use github pages to not get rate limited, assert sequences with ena specific fields were submitted by us or the insdc_submission_group
preview
Triggers a deployment to argocd
#3327
opened Dec 2, 2024 by
anna-parker
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2 tasks
chore(keycloakify): slight refactor of version targeting
#3323
opened Dec 2, 2024 by
corneliusroemer
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2 tasks
try removing command line args in backend deployment
#3215
opened Nov 14, 2024 by
theosanderson
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2 tasks
feat(ena-deposition): Add metadata revision option
#3180
opened Nov 5, 2024 by
anna-parker
•
Draft
2 tasks
When hard refresh fails with an exit code, make SILO exit
discussion
Open questions
#3151
opened Nov 1, 2024 by
theosanderson
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[DO NOT MERGE] Add ReVSeq test instance
preview
Triggers a deployment to argocd
#3123
opened Oct 29, 2024 by
chaoran-chen
•
Draft
feat(integration): Add initial "integration tests"
#3121
opened Oct 29, 2024 by
theosanderson
•
Draft
feat(ingest, backend): Modify ingest to handle curation of ingested sequences
#3112
opened Oct 29, 2024 by
anna-parker
•
Draft
4 tasks
wip: Demo of using pagefind search
format_me
Triggers github_actions to format website code on PR
#3081
opened Oct 27, 2024 by
corneliusroemer
•
Draft
fix(backend): lock rows that are being streamed to pipeline
format_me
Triggers github_actions to format website code on PR
#3073
opened Oct 24, 2024 by
corneliusroemer
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2 tasks
feat(ingest): Use pycountry and fuzzywuzzy to format countries
#3026
opened Oct 18, 2024 by
anna-parker
•
Draft
2 tasks
feat(ingest): Use augur curate to curate country metadata
#3015
opened Oct 17, 2024 by
anna-parker
•
Draft
2 tasks
feat(ci): allow creation of ppx preview pr to ease testing
deployment
Code changes targetting the deployment infrastructure
preview-ppx
Trigger creation of preview PR on pathoplexus
#2979
opened Oct 9, 2024 by
corneliusroemer
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Draft
chore(backend): add todo #2919 for better metadata schema description
format_me
Triggers github_actions to format website code on PR
#2920
opened Oct 1, 2024 by
corneliusroemer
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2 tasks
Allow custom values files for
--from-live
#2850
opened Sep 19, 2024 by
theosanderson
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2 tasks
don't merge: try out more postgres logging
#2779
opened Sep 13, 2024 by
corneliusroemer
•
Draft
2 tasks
[don't merge until ingest grouping changes tested] fix(ingest): also try reverse complement when identifying segment
bug
Something isn't working
ingest
Ingest pipeline
#2651
opened Aug 28, 2024 by
corneliusroemer
•
Draft
1 task
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