Skip to content

Releases: eastgenomics/eggd_conductor_configs

MYE_v2.0.7

29 Oct 14:53
@pofuoku pofuoku
MYE_2.0.7
1d8530c
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
MYE_v2.0.7 Latest
Latest

Changes

  • Added Changelog for v2.0.7
  • Updated ClinVar GRCh38 annotation resource files to version 20241021
  • Updated README to reference clinvar version 20241021

Confluence page:
https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3465510913/eggd_conductor_uranus_MYE_config_v2.0.7

Assets 2
Loading

TSO500_v2.2.3

28 Oct 09:34
@fletchercr fletchercr
TSO500_v2.2.3
7be2664
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
TSO500_v2.2.3

Changes:

  • update assay config version from 2.2.2 to 2.2.3
  • update changelog with v2.2.3 changes
  • update the TSO500 VEP config to v1.2.12 (file-GvJ326Q40P98VVXjv8BGfybx)

Confluence page: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3459743771/eggd_conductor_helios_TSO500_config+v2.2.3

Assets 2
Loading

TSO500 v2.2.2

22 Oct 10:30
@spaul91 spaul91
TSO500_v2.2.2
552f434
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
TSO500 v2.2.2

Changes:

  • Added new EPIC test codes
Assets 2
Loading

MYE_v2.0.6

04 Oct 10:16
@Aisha-D Aisha-D
MYE_v2.0.6
741d179
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
MYE_v2.0.6

Changes:

  • Renamed config file to eggd_conductor_uranus_MYE_config_v2.0.6.json
  • Updated VEP 103 cache used by eggd_vcf_handler_for_uranus
  • Updated README to reference VEP 103

Confluence page: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3417604115/eggd_conductor_uranus_MYE_config_v2.0.6

Assets 2
Loading

TSO500_v2.2.1

01 Oct 12:30
@fletchercr fletchercr
TSO500_v2.2.1
1fe4068
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
TSO500_v2.2.1

Changes:

  • update assay config version from 2.2.0 to 2.2.1
  • update changelog with v2.2.1 changes
  • update the TSO500 VEP transcript list to v1.3.0 (file-Gqpgx7Q45bJP8bBbJb3KBJyJ)

Confluence page: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3418718209/eggd_conductor_helios_TSO500_config_v2.2.1.json

Assets 2
Loading

MYE_v2.0.5

20 Sep 15:50
@fletchercr fletchercr
MYE_v2.0.5
93dd098
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
MYE_v2.0.5

Changes:

  • Renamed config file to eggd_conductor_uranus_MYE_config_v2.0.5.json
  • Updated ClinVar GRCh38 annotation resource files to version 20240909
  • Updated README to reference clinvar version 20240909

Confluence page: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3397517313/eggd_conductor_uranus_MYE_config_v2.0.5

Assets 2
Loading

TSO500_v2.2.0

23 Sep 11:08
@fletchercr fletchercr
TSO500_v2.2.0
380914b
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
TSO500_v2.2.0

Changes:

  • update assay config version from 2.1.2 to 2.2.0
  • update changelog with v2.2.0 changes
  • added a new app (eggd_MetricsOutput_MultiQC_parser, app-Gpzb0Y04FXvff0vJPxj0p1x1) that takes MetricsOutput.tsv from eggd_tso500 as input
  • update analysis numbers because of the added app
  • update MultiQC to depend on the output of eggd_MetricsOutput_MultiQC_parser
  • update MultiQC config file to TSO500_multiqc_config_v2.1.0.yaml
  • update VEP config to point to tso500_vep_config_v1.2.11.json

Confluence page: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3389554689/eggd_conductor_helios_TSO500_config_v2.2.0.json

Assets 2
Loading

TSO500_v2.1.2

30 Aug 08:44
@cnascim1 cnascim1
TSO500_v2.1.2
19fcd97
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
TSO500_v2.1.2

Updated to include latest tso500_vep_config_v1.2.10.json

Assets 2
Loading

MYE_v2.0.4

23 Aug 14:19
@pofuoku pofuoku
MYE_v2.0.4
9cd14be
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
MYE_v2.0.4

Changes:

  • Renamed config file to eggd_conductor_uranus_MYE_config_v2.0.4.json
  • Updated ClinVar GRCh38 annotation resource files to version 20240813
  • Updated README to reference clinvar version 20240813

Confluence page: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3357835265/eggd_conductor_uranus_MYE_config_v2.0.4

Assets 2
Loading

TWE_v1.4.0

14 Aug 14:43
@pofuoku pofuoku
TWE_v1.4.0
d3a7696
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
Compare
Choose a tag to compare
TWE_v1.4.0

Changes

  • updated dias_single_v2.4.0 to dias_single_v2.5.0
  • added the following input fields:
    • stage-picardQC.run_CollectRnaSeqMetrics
    • stage-mosdepth.mosdepth_docker
    • stage-sex_check.male_threshold
    • stage-sex_check.female_threshold
  • added stage-sex_check to output_dirs
  • Updated multiqc config file to WES_multiqc_config_v2.3.0.yaml

Confluence page
https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3336208385/eggd_conductor_dias_TWE_config_v1.4.0.json

Assets 2
Loading