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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 232 repositories
  • eggd_001_Reference Public
    eastgenomics/eggd_001_Reference’s past year of commit activity
    Perl 1 1 9 (1 issue needs help) 2 Updated Oct 2, 2024
  • eggd_conductor Public

    DNAnexus app for automated analysis

    eastgenomics/eggd_conductor’s past year of commit activity
    Python 1 MIT 1 20 0 Updated Oct 2, 2024
  • RD_requests Public
    eastgenomics/RD_requests’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 2, 2024
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    eastgenomics/MultiQC’s past year of commit activity
    JavaScript 0 GPL-3.0 603 0 0 Updated Oct 1, 2024
  • s3_upload Public

    Uploads Illumina sequencing runs into Amazon S3 storage on completion of sequencing

    eastgenomics/s3_upload’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 1, 2024
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 3 2 Updated Oct 1, 2024
  • trendyQC Public

    Django app for monitoring trends in MultiQC data

    eastgenomics/trendyQC’s past year of commit activity
    Python 0 MIT 0 22 (1 issue needs help) 0 Updated Oct 1, 2024
  • eggd_generate_rd_wgs_workbook Public
    eastgenomics/eggd_generate_rd_wgs_workbook’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2024
  • egg5_dias_CEN_config Public
    eastgenomics/egg5_dias_CEN_config’s past year of commit activity
    2 MIT 0 1 0 Updated Sep 30, 2024
  • eggd_vcf_qc Public

    Simple QC of a vcf file

    eastgenomics/eggd_vcf_qc’s past year of commit activity
    Python 0 0 0 0 Updated Sep 27, 2024
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