Merge pull request #83 from eastgenomics/URA-880-eggd-conductor-uranu…

…s-mye-config-v2.0.6 URA-880 eggd conductor uranus mye config v2.0.6 (#83)
eastgenomics · Oct 1, 2024 · 741d179 · 741d179
2 parents 1fe4068 + 092b723
commit 741d179
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/...d_conductor_uranus_MYE_config_v2.0.5.json → ...d_conductor_uranus_MYE_config_v2.0.6.json b/...d_conductor_uranus_MYE_config_v2.0.5.json → ...d_conductor_uranus_MYE_config_v2.0.6.json
@@ -2,7 +2,7 @@
     "name": "Config for myeloid assay",
     "assay": "MYE",
     "assay_code": "EGG2|-8128-|-8476-|-5877-",
-    "version": "2.0.5",
+    "version": "2.0.6",
     "details": "Includes main Uranus workflow, multi_fastqc, somalier workflow and multiQC",
     "changelog": {
         "v1.0.0": "Initial working version",
@@ -25,7 +25,8 @@
         "v2.0.2": "Updated to use ClinVar version 20240708 (hg38)",
         "v2.0.3": "Updated main workflow to 2.1.0 (eggd_vcf_handler_for_uranus v2.8.0, eggd_cgppindel v1.2.0, eggd_sompy v1.0.4)",
         "v2.0.4": "Updated to use ClinVar version 20240813 (hg38)",
-        "v2.0.5": "Updated to use ClinVar version 20240909 (hg38)"
+        "v2.0.5": "Updated to use ClinVar version 20240909 (hg38)",
+        "v2.0.6": "Update VEP 103 cache"
     },
     "demultiplex": true,
     "users": {
@@ -116,7 +117,7 @@
                       "$dnanexus_link": "file-G61yBf0433Gp4BBVGj0jxqvP"
                     },
                     {
-                      "$dnanexus_link": "file-G61yF38433GQgP504Px5PZ4G"
+                      "$dnanexus_link": "file-Gqpj9Pj4x0kG0QY2vY77VQ4J"
                     }
                 ],
                 "stage-eggd_vcf_handler_for_uranus.vep_annotation": [

diff --git a/assay_configs/MYE/readme.md b/assay_configs/MYE/readme.md
@@ -47,7 +47,7 @@ Below defines all external input files, their versions and file locations in DNA
 ||`vep_refs`|[Homo_sapiens.GRCh38.dna.toplevel.fa.gz](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-G61y95Q433Gk05zyFKF9kFv2)|not versioned|
 ||`vep_refs`|[Homo_sapiens.GRCh38.dna.toplevel.fa.gz.fai](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-G61yBV8433GjbVj022PyV3K5)|not versioned|
 ||`vep_refs`|[Homo_sapiens.GRCh38.dna.toplevel.fa.gz.gzi](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-G61yBf0433Gp4BBVGj0jxqvP)|not versioned|
-||`vep_refs`|[homo_sapiens_refseq_vep_103_GRCh38.tar.gz](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-G61yF38433GQgP504Px5PZ4G)|not versioned|
+||`vep_refs`|[homo_sapiens_refseq_vep_103_GRCh38.tar.gz](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-Gqpj9Pj4x0kG0QY2vY77VQ4J)|not versioned|
 ||`maf_file`|[haemonc_1706_samples_withoutchr.vcf.gz](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-Gj6YQg84qv8v2J1XKJy4fQYg)|not versioned|
 ||`maf_file_tbi`|[haemonc_1706_samples_withoutchr.vcf.gz.tbi](https://platform.dnanexus.com/panx/projects/Fkb6Gkj433GVVvj73J7x8KbV/data/?scope=project&id.values=file-Gj6YQg84qv8Z3F4J8fX7YK6V)|not versioned|