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118 workflow runs
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move find_orf into its own source file Local test #246: Commit 87e361f pushed by Donaim
September 22, 2023 00:53 7m 48s master
master
September 22, 2023 00:53 7m 48s
move shared classes to their own source files Local test #245: Commit 3a216a2 pushed by Donaim
September 22, 2023 00:08 7m 41s master
master
September 22, 2023 00:08 7m 41s
void direct use of AlignedSequence.map_index Local test #244: Commit 59c576a pushed by Donaim
September 21, 2023 23:52 7m 7s master
master
September 21, 2023 23:52 7m 7s
avoid direct use of coordinates mapping in has_reading_frames Local test #243: Commit deb2d95 pushed by Donaim
September 21, 2023 23:48 6m 29s master
master
September 21, 2023 23:48 6m 29s
avoid direct use of coordinates mapping in has_reading_frames Local test #242: Commit d1ee5c1 pushed by Donaim
September 21, 2023 23:47 6m 40s master
master
September 21, 2023 23:47 6m 40s
hide all mafft uses behind AlignedSequence Local test #241: Commit f950e4e pushed by Donaim
September 21, 2023 23:28 6m 34s master
master
September 21, 2023 23:28 6m 34s
make AlignedSequence abstraction Local test #240: Commit d30c6cb pushed by Donaim
September 21, 2023 23:23 6m 33s master
master
September 21, 2023 23:23 6m 33s
make AlignedSequence abstraction Local test #239: Commit 32751ac pushed by Donaim
September 21, 2023 23:12 1m 6s master
master
September 21, 2023 23:12 1m 6s
remove redundant type cast Local test #238: Commit aba8d2c pushed by Donaim
September 21, 2023 16:26 6m 38s master
master
September 21, 2023 16:26 6m 38s
use precise distance metric when searching for ORFs Local test #237: Commit 5fb3c0b pushed by Donaim
September 21, 2023 01:14 6m 52s master
master
September 21, 2023 01:14 6m 52s
factor out detailed_aligner Local test #236: Commit 6138ee8 pushed by Donaim
September 21, 2023 00:30 6m 32s master
master
September 21, 2023 00:30 6m 32s
normalize distance to [0, 1) with f(average_dist) = 0.5 Local test #235: Commit a4d5c39 pushed by Donaim
September 20, 2023 23:50 6m 37s master
master
September 20, 2023 23:50 6m 37s
add orfs_coverage data to holistic.csv Local test #234: Commit 7394784 pushed by Donaim
September 18, 2023 19:37 6m 40s master
master
September 18, 2023 19:37 6m 40s
include subtype positions to orfs.csv Local test #233: Commit d3678f7 pushed by Donaim
September 18, 2023 19:15 6m 34s master
master
September 18, 2023 19:15 6m 34s
add qlen to holistic info Local test #232: Commit 355d219 pushed by Donaim
September 18, 2023 18:43 6m 36s master
master
September 18, 2023 18:43 6m 36s
fix calculation of blast_sseq_coverage Local test #231: Commit ca49f71 pushed by Donaim
September 18, 2023 18:37 6m 36s master
master
September 18, 2023 18:37 6m 36s
fix typo in holistic field name Local test #230: Commit 9a36671 pushed by Donaim
September 18, 2023 18:25 6m 35s master
master
September 18, 2023 18:25 6m 35s
Add another output file: holistic.csv Local test #229: Commit 022ee3d pushed by Donaim
September 18, 2023 18:13 6m 40s master
master
September 18, 2023 18:13 6m 40s
Catch invalid codon errors Local test #228: Commit 76f0401 pushed by Donaim
September 16, 2023 05:17 8m 1s master
master
September 16, 2023 05:17 8m 1s
regenerate blast database Local test #227: Commit fe682b4 pushed by Donaim
September 16, 2023 05:12 7m 2s master
master
September 16, 2023 05:12 7m 2s
Catch invalid codon errors Local test #226: Commit 76f0401 pushed by Donaim
September 16, 2023 04:59 6m 42s master
master
September 16, 2023 04:59 6m 42s
regenerate blast database Local test #225: Commit fe682b4 pushed by Donaim
September 16, 2023 04:59 7m 51s master
master
September 16, 2023 04:59 7m 51s
Catch invalid codon errors Local test #224: Commit e79c388 pushed by Donaim
September 16, 2023 02:46 6m 29s master
master
September 16, 2023 02:46 6m 29s
regenerate blast database Local test #223: Commit ad3e777 pushed by Donaim
September 16, 2023 02:46 6m 39s master
master
September 16, 2023 02:46 6m 39s
catch alignment error Local test #222: Commit 473313e pushed by Donaim
September 16, 2023 02:46 8m 26s master
master
September 16, 2023 02:46 8m 26s