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Final README.md update Local test #296: Commit dffd07b pushed by Donaim
March 14, 2024 15:37 6m 57s master
master
March 14, 2024 15:37 6m 57s
Final README.md update Local test #295: Commit 63634b8 pushed by Donaim
March 14, 2024 15:33 28s master
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March 14, 2024 15:33 28s
add --check-unknown-nucleotides flag Local test #294: Commit 5580125 pushed by Donaim
February 16, 2024 17:20 6m 55s master
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February 16, 2024 17:20 6m 55s
add --check-unknown-nucleotides flag Local test #293: Commit 855918b pushed by Donaim
February 16, 2024 17:19 7m 42s master
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February 16, 2024 17:19 7m 42s
include final decision into holistic.csv Local test #292: Commit 975a58d pushed by Donaim
February 7, 2024 22:34 7m 7s master
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February 7, 2024 22:34 7m 7s
tests: add a case with lowercase letters Local test #291: Commit 4c77509 pushed by Donaim
September 27, 2023 21:44 10m 24s master
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September 27, 2023 21:44 10m 24s
improve reverse decision logic Local test #290: Commit 6e8983a pushed by Donaim
September 27, 2023 18:45 9m 44s master
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September 27, 2023 18:45 9m 44s
include subtype nucleotides in orfs.json Local test #289: Commit 4cf554d pushed by Donaim
September 27, 2023 18:15 9m 51s master
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September 27, 2023 18:15 9m 51s
fix nucleotides list in orfs.json Local test #288: Commit 7344242 pushed by Donaim
September 27, 2023 18:04 8m 30s master
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September 27, 2023 18:04 8m 30s
add subtypes.fasta to the list of output files Local test #287: Commit c4d6804 pushed by Donaim
September 27, 2023 17:24 9m 23s master
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September 27, 2023 17:24 9m 23s
fix start/end positions edge cases Local test #286: Commit 3e19d46 pushed by Donaim
September 27, 2023 16:19 9m 37s master
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September 27, 2023 16:19 9m 37s
inline individual sequence analysis Local test #285: Commit 8136533 pushed by Donaim
September 27, 2023 16:11 8m 46s master
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September 27, 2023 16:11 8m 46s
use aligned_sequence.get_orf where possible Local test #284: Commit baf4bf3 pushed by Donaim
September 27, 2023 15:53 11m 34s master
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September 27, 2023 15:53 11m 34s
use aligned_sequence.slice where possible Local test #283: Commit f8e578e pushed by Donaim
September 27, 2023 15:49 8m 51s master
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September 27, 2023 15:49 8m 51s
remove dead code Local test #282: Commit 189e5f9 pushed by Donaim
September 27, 2023 00:48 8m 50s master
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September 27, 2023 00:48 8m 50s
remove unused logging function Local test #281: Commit 727d024 pushed by Donaim
September 27, 2023 00:47 10m 28s master
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September 27, 2023 00:47 10m 28s
make sure to not crash on empty input sequences Local test #280: Commit 8830259 pushed by Donaim
September 27, 2023 00:44 9m 39s master
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September 27, 2023 00:44 9m 39s
test: add small sequences cases Local test #279: Commit d045178 pushed by Donaim
September 27, 2023 00:39 8m 58s master
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September 27, 2023 00:39 8m 58s
remove dead code Local test #278: Commit b182c3e pushed by Donaim
September 27, 2023 00:36 8m 26s master
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September 27, 2023 00:36 8m 26s
remove handling of alignment failures Local test #277: Commit 1fe61c6 pushed by Donaim
September 27, 2023 00:30 8m 35s master
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September 27, 2023 00:30 8m 35s
tests: add more edge cases Local test #276: Commit c7b622b pushed by Donaim
September 27, 2023 00:29 8m 49s master
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September 27, 2023 00:29 8m 49s
do not include btop into blast.csv Local test #275: Commit 748316c pushed by Donaim
September 27, 2023 00:14 12m 31s master
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September 27, 2023 00:14 12m 31s
fix HXB2 reference in all.fasta Local test #274: Commit fade519 pushed by Donaim
September 26, 2023 19:44 10m 8s master
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September 26, 2023 19:44 10m 8s
subtype_alignments: update .nin files Local test #273: Commit fdf1863 pushed by Donaim
September 26, 2023 19:31 8m 26s master
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September 26, 2023 19:31 8m 26s
test: add run_end_to_end::edgy cases Local test #272: Commit 57afd0b pushed by Donaim
September 26, 2023 19:27 8m 24s master
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September 26, 2023 19:27 8m 24s