This repository has been archived by the owner on Mar 19, 2024. It is now read-only.
use precise distance metric when searching for ORFs #237
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| name: Local test | |
| on: | |
| push: | |
| branches: [ "master", "my", "devel" ] | |
| pull_request: | |
| branches: [ "master", "my", "devel" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: sudo apt-get update && sudo apt-get install -y python3 python3-pip mafft ncbi-blast+ && pip3 install pytest pytest-cov | |
| - name: Run build | |
| run: pip3 install . | |
| - name: Run tests and collect coverage | |
| run: pytest -v -m "not overnight" --cov=./bin --cov=./intact --cov=./util | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |