July 2020 release

deployed to T2D (mdv45), stroke (mdv77), sleep (mdv113) and lung (mdv131) portals

May 2020 release

T2DKP:
BioMe AMP T2D GWAS updated
FinnGen GWAS
PR interval 1000G GWAS
UK Biobank Cardiac MRI LV GWAS
UK Biobank atrial fibrillation exome sequence analysis
UK Biobank dietary habit GWAS
UK Biobank Mendelian trait GWAS
Diabetic retinopathy GWAS: African Americans
Diabetic retinopathy GWAS: Europeans
GIANT-UK Biobank GWAS Meta-analysis
MAGIC fasting glucose change over time GWAS
UK Biobank 409K GWAS
Hypertension exome chip analysis

CVDKP:
FinnGen GWAS
PR interval 1000G GWAS
UK Biobank Cardiac MRI LV GWAS

SDKP:
EAGLE child sleep duration GWAS

MSK-KP
UK Biobank-arcOGEN osteoarthritis GWAS Meta-analysis
Also adds JSBMR logo to home page

Musculoskeletal portal release

This release is the official "soft launch" of the MSK-KP. All portals were updated in order to add the MSK-KP to the list of KPN portals on their home pages. The portal code used for the MSK-KP differs from the code used to update the other portals in these respects:

• an extra logo was added to the MSK-KP home page
• a link to a new video was added to the MSK-KP home page
• analyticsMSKKP.gsp was added and code was added to t2dGenesCore.gsp in order to enable Google analytics for MSK-KP

February 2020 release

Deployed to T2DKP, CVDKP, CDKP on 3/3/20

T2DKP mdv43

Total: 4 new integrated datasets, 7 new phenotypes -> 88 datasets, 198 traits
New datasets:
GWAS_AGEN_ea
GWAS_AMDGen_mdv43, IAMDGC 2013 AMD GWAS (adds 3 new phenotypes: AMD, GA, ND)
GWAS_PACG_mdv43, Primary angle closure GWAS (adds one new phenotype, PACG)
GWAS_GIANTxSMK, GIANT 2017 smoking-adjusted GWAS (adds 3 new phenotypes, BMIadjSMK, WCadjBMISMK, WHRadjBMISMK)
T2D associations added to GWAS_CUHK_ea, Hong Kong Diabetes Register GWAS
Gene-level results for download from GWAS_UKBiobankAF_eu_dv1, UK Biobank atrial fibrillation exome sequence analysis
MGI KO data re-loaded

New features:
New contact form
Upper menu bar reorganized
Home page banner added for new video: API webinar
DGA logo/link added to home page
Gene column added to top variants table by default
Impact column in top variants table re-labeled SO term
Redirect from old data page
Osteoblast DNase and ATAC-seq tracks available

jan2020: Ps mp undo filters (#187)

Hermes publication

QA-Oct15

show the value of phenotype which is selected on the homepage (#186)

ASHG release

This release includes:

• mdv41 new datasets
  CKDGen GWAS
  CKDGen GWAS - microalbuminuria associations
  CKDGen GWAS - stratified UACR associations
  Joint T2D-CHD GWAS
  TOPMed HbA1c Meta-analysis WGS
  UK Biobank CardioMetabolic Consortium CHD GWAS

• Data page and informational pages now reside on KPN website, including new API page

• new home page and upper menu design

• home page "New" links to tutorial and webinar video

• phenotype filter implemented on Manhattan plot page

August 2019 release

New data and features in this release are described here: http://t2d-genetics-portal.blogspot.com/2019/08/new-t2dkp-release-brings-new-datasets.html

ADA release 2019

T2DKP data:
Biobank Japan - 3 sets
Singapore Living Biobank GWAS: Chinese
Singapore Living Biobank GWAS: Malay
Singapore Chinese Eye Studies
Singapore Indian Eye Study
Singapore Malay Eye Study

• T2D effector gene table
• custom association analysis (GAIT + burden test) accessible via Analysis modules page
• new video available on Resources page
• KPN logo on home page leads to new KPN website
• new link to data ingest tracker on Collaborate page

First release of gene prioritization UI

includes first release of gene prioritization UI