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make sure the question marksin the body of the table either provide h…
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…elp text, or else disappear if they are in a header
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Ben Alexander committed Apr 23, 2019
1 parent d4c98b3 commit c9eb12c
Showing 1 changed file with 11 additions and 109 deletions.
120 changes: 11 additions & 109 deletions web-app/js/lib/dport/dynamicUi.js
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Original file line number Diff line number Diff line change
Expand Up @@ -2276,114 +2276,6 @@ mpgSoftware.dynamicUi = (function () {
} );


//
//
//var dataAnnotationTypeCode = 'COL';
//var returnObject = createNewDisplayReturnObject();
//var eColocInfo = getAccumulatorObject('eColocInfo');
//_.forEach(_.groupBy(getAccumulatorObject("rawColoInfo"), 'gene'), function (value, geneName) {
// var geneObject = {gene: geneName};
// geneObject['phenotypes'] = _.map(_.uniqBy(value, 'phenotype'), function (o) {
// return o.phenotype
// }).sort();
// geneObject['tissues'] = _.map(_.uniqBy(value, 'tissue'), function (o) {
// return o.tissue
// }).sort();
// geneObject['varId'] = _.map(_.uniqBy(value, 'var_id'), function (o) {
// return o.var_id
// }).sort();
// geneObject['colocTissuesVector'] = function () {
// return geneObject['tissue'];
// };
// geneObject['sourceByTissue'] = function () {
// return _.groupBy(value, 'tissue');
// };
// geneObject['data'] = value;
// eColocInfo.push(geneObject);
//});
//
//
//var intermediateDataStructure = new IntermediateDataStructure();
//
//if (( typeof eColocInfo !== 'undefined') && ( eColocInfo.length > 0)) {
// addRowHolderToIntermediateDataStructure(dataAnnotationTypeCode,intermediateDataStructure);
//
// // set up the headers, and give us an empty row of column cells
// var headerNames = [];
// if (accumulatorObjectFieldEmpty("geneNameArray")) {
// console.log("We always have to have a record of the current gene names in depict gene set display. We have a problem.");
// } else {
// headerNames = _.map(getAccumulatorObject("geneNameArray"),'name');
// _.forEach(getAccumulatorObject("geneNameArray"), function (oneRecord) {
// intermediateDataStructure.rowsToAdd[0].columnCells.push(new IntermediateStructureDataCell(oneRecord.name,
// {},"header",'EMC'));
// });
// }
//
//
// // set up the headers, and give us an empty row of column cells
//
//
// // fill in all of the column cells
// _.forEach(eColocInfo, function (recordsPerGene) {
// var indexOfColumn = _.indexOf(headerNames, recordsPerGene.gene);
// recordsPerGene["recordsExist"] = [];
// if (indexOfColumn === -1) {
// console.log("Did not find index of gene name="+recordsPerGene.gene+" for eColocInfo. Shouldn't we?")
// } else {
// var validRecords = _.filter(recordsPerGene.data,function(o){return true});
// recordsPerGene["numberOfRecords"] = validRecords.length;
// if ((validRecords.length === 0)) {
// intermediateDataStructure.rowsToAdd[0].columnCells[indexOfColumn] = new IntermediateStructureDataCell(recordsPerGene.geneName,
// {}, "tissue specific",'EMC');
// } else {
// var records = _.map(_.orderBy(validRecords,["prob_exists_coloc"],["desc"]),function(tissueRecord){
// return { tissue: tissueRecord.tissue,
// conditional_prob_snp_coloc: UTILS.realNumberFormatter(""+tissueRecord.conditional_prob_snp_coloc),
// unconditional_prob_snp_coloc: UTILS.realNumberFormatter(""+tissueRecord.unconditional_prob_snp_coloc),
// prob_exists_coloc: UTILS.realNumberFormatter(""+tissueRecord.prob_exists_coloc),
// var_id: tissueRecord.var_id,
// numericalValue: tissueRecord.prob_exists_coloc
// }});
// var recordsCellPresentationString = "records="+validRecords.length;
// var significanceCellPresentationString = 0;
// var significanceValue = 0;
// if (( typeof records !== 'undefined')&&
// (records.length>0)){
// significanceValue = records[0].prob_exists_coloc;
// significanceCellPresentationString = "CLPP="+records[0].prob_exists_coloc+" ("+records[0].tissue+")";
// }
//
// var renderData = {
// cellPresentationStringMap:{ Records:recordsCellPresentationString,
// Significance:significanceCellPresentationString },
// numberOfRecords:validRecords.length,
// tissueCategoryNumber:categorizeTissueNumbers( validRecords.length ),
// significanceCategoryNumber:categorizeSignificanceNumbers( records, "COL" ),
// recordsExist:(validRecords.length)?[1]:[],
// gene:recordsPerGene.gene,
// significanceValue:significanceValue,
// records:records
// };
// intermediateDataStructure.rowsToAdd[0].columnCells[indexOfColumn] = new IntermediateStructureDataCell(recordsPerGene.geneName,
// renderData,"tissue specific", dataAnnotationTypeCode);
// }
//
// }
// });
// intermediateDataStructure.tableToUpdate = "table.combinedGeneTableHolder";
//}
//
//
//prepareToPresentToTheScreen("#dynamicGeneHolder div.dynamicUiHolder",
// '#dynamicAbcGeneTable',
// returnObject,
// clearBeforeStarting,
// intermediateDataStructure,
// true,
// 'geneTableGeneHeaders');
//prepareToPresentToTheScreen("#dynamicGeneHolder div.dynamicUiHolder", '#dynamicColocalizationGeneTable', returnObject, clearBeforeStarting);
//

};

Expand Down Expand Up @@ -4601,7 +4493,11 @@ var howToHandleSorting = function(e,callingObject,typeOfHeader,dataTable) {
$('div.significanceCategory_6').parents('td').css('background',CELL_COLORING_UNUSED);
}
$('div.subcategory').css('font-weight','normal');

$('[data-toggle="popover"]').popover({
animation: true,
html: true,
template: '<div class="popover" role="tooltip"><div class="arrow"></div><h5 class="popover-title"></h5><div class="popover-content"></div></div>'
});
}
break;
case 'geneTableAnnotationHeaders':
Expand Down Expand Up @@ -4634,6 +4530,12 @@ var howToHandleSorting = function(e,callingObject,typeOfHeader,dataTable) {
$('div.significanceCategory_6').parents('td').css('background',CELL_COLORING_UNUSED);
}
$('div.subcategory').css('font-weight','bold');
$('th>div>a[data-toggle="popover"]').hide();
// $('[data-toggle="popover"]').popover({
// animation: true,
// html: true,
// template: '<div class="popover" role="tooltip"><div class="arrow"></div><h5 class="popover-title"></h5><div class="popover-content"></div></div>'
// });
}
break;
case 'variantTableVariantHeaders':
Expand Down

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