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Issues list

Translating the OHBM COBIDAS MRI into Chinese bhg:beijingnanning_china_1

Beijing Nannning event

project

#142 opened Dec 2, 2022 by Remi-Gau

The Developmental Trajectories of Schoolchildren's Brain Functional Specialization and its Significance to Cognitive Performance — Taking Verbal Intelligence as an Example bhg:beijingnanning_china_1

Beijing Nannning event

project

#141 opened Dec 2, 2022 by Remi-Gau

A Method for Harmonizing Test-retest Multi-scanner Imaging Data bhg:beijingnanning_china_1

Beijing Nannning event

project

#140 opened Dec 2, 2022 by Remi-Gau

Charting growth of human Basal Ganglia and thalamus at school age bhg:beijingnanning_china_1

Beijing Nannning event

project

#139 opened Dec 2, 2022 by Remi-Gau

fix url in the load_confounds template

#134 opened Feb 15, 2021 by pbellec

Make Brainhack Accessible WorldWide: Translation of Brainhack Glossary into Different Languages bhg:mtl_can_1 git_skills:0_none git_skills:1_commit_push git_skills:2_branches_PRs git_skills:3_continuous_integration programming:documentation

Markdown, Sphinx

project_development_status:0_concept_no_content project_development_status:1_basic structure project_tools_skills:familiar project_tools_skills:none project_type:data_management

involves programming

project_type:documentation project status:published

#130 opened Feb 15, 2021 by complexbrains

6 of 15 tasks

OpenMentalizing: leveraging open neurological data for uncovering the differences in mentalizing/empathy capabilities bhg:mtl_can_1 git_skills:1_commit_push modality:MRI modality:PET programming:Julia programming:Matlab programming:Python programming:R programming:shell_scripting programming:Web programming:workflows

nextflow

project_development_status:0_concept_no_content project_tools_skills:expert project_type:method_development project_type:pipeline_development project status:published tools:BIDS tools:Datalad tools:DIPY topic:causality topic:hypothesis_testing topic:neural_decoding topic:PCA topic:physiology topic:statistical_modelling topic:systems_neuroscience

#128 opened Feb 15, 2021 by stefanches7

7 of 13 tasks

Standardized denoising strategies with fMRIprep bhg:mtl_can_1 modality:fMRI programming:documentation

Markdown, Sphinx

programming:Python programming:shell_scripting programming:workflows

nextflow

project_tools_skills:familiar project_type:coding_methods project_type:documentation project status:published tools:fMRIPrep topic:reproducible_scientific_methods

#126 opened Feb 15, 2021 by pbellec

9 tasks done

CleanBibImpact: Do papers with a Citation Diversity Statement have more diverse citations? bhg:mtl_can_1 git_skills:1_commit_push git_skills:2_branches_PRs programming:none programming:Python project_development_status:1_basic structure project status:published topic:causality topic:data_visualisation topic:diversity_inclusivity_equality

#124 opened Feb 15, 2021 by koudyk

6 of 17 tasks

Pydesperate times call for Pydrastic measures bhg:mtl_can_1 git_skills:1_commit_push git_skills:2_branches_PRs git_skills:3_continuous_integration modality:behavioral modality:DWI modality:ECG modality:ECOG modality:EEG modality:eye_tracking modality:fMRI modality:fNIRS modality:MEG modality:MRI modality:PET modality:TDCS modality:TMS programming:containerization

Docker, Singularity

programming:documentation

Markdown, Sphinx

programming:Python programming:shell_scripting programming:Unix_command_line programming:workflows

nextflow

project_development_status:2_releases_existing project_tools_skills:comfortable project_tools_skills:expert project_tools_skills:familiar project_type:documentation project_type:method_development project_type:pipeline_development project status:published tools:AFNI tools:ANTs tools:BIDS tools:Brainstorm tools:Datalad tools:DIPY tools:FieldTrip tools:Freesurfer tools:FSL tools:MNE tools:MRtrix tools:Nipype tools:SPM topic:reproducible_scientific_methods

#122 opened Feb 4, 2021 by effigies

6 of 11 tasks

Matplotlib surface plotting bhg:micro2macro_gbr_1 git_skills:0_none git_skills:1_commit_push git_skills:2_branches_PRs modality:fMRI programming:documentation

Markdown, Sphinx

programming:Python project_development_status:1_basic structure project_tools_skills:comfortable project_tools_skills:familiar project_type:documentation project status:published tools:Jupyter topic:data_visualisation

#119 opened Jan 26, 2021 by kwagstyl

6 of 11 tasks

Microstructural variations on a theme: a bottom-up approach to diffusion models bhg:micro2macro_gbr_1 git_skills:0_none git_skills:1_commit_push modality:DWI programming:containerization

Docker, Singularity

programming:Python programming:shell_scripting programming:Unix_command_line project_development_status:0_concept_no_content project_tools_skills:comfortable project_tools_skills:familiar project_type:pipeline_development project status:published tools:Datalad tools:DIPY tools:FSL topic:diffusion topic:MR_methodologies topic:reproducible_scientific_methods

#117 opened Jan 25, 2021 by matteomancini

5 of 10 tasks

Bayesian Hierarchical Microstructure Modelling in the Brain bhg:micro2macro_gbr_1 git_skills:0_none git_skills:1_commit_push git_skills:2_branches_PRs modality:DWI modality:MRI programming:Python programming:Unix_command_line project_development_status:0_concept_no_content project_tools_skills:comfortable project_tools_skills:expert project_tools_skills:familiar project_type:coding_methods project_type:method_development project status:published tools:Jupyter topic:Bayesian_approaches topic:diffusion topic:statistical_modelling

#112 opened Jan 22, 2021 by PaddySlator

6 of 11 tasks

Fantastic measures and how to repeat them: tractography-based test retest reproducibility of microstructural MRI bhg:micro2macro_gbr_1 git_skills:0_none modality:DWI modality:MRI programming:Matlab programming:R project_development_status:2_releases_existing project_tools_skills:comfortable project_tools_skills:familiar project_type:coding_methods project status:published tools:FSL tools:MRtrix topic:connectome topic:data_visualisation topic:diffusion topic:hypothesis_testing topic:MR_methodologies topic:reproducible_scientific_methods topic:statistical_modelling topic:tractography

#108 opened Jan 20, 2021 by KristinKoller

7 of 10 tasks

Implementation of soma and neurite density imaging (SANDI) in the accelerated microstructure imaging via convex optimization (AMICO) framework bhg:micro2macro_gbr_1 git_skills:0_none modality:DWI modality:MRI programming:Python project_development_status:1_basic structure project_tools_skills:familiar project_type:coding_methods project_type:pipeline_development project status:published tools:DIPY tools:FSL tools:Jupyter topic:diffusion topic:MR_methodologies

#104 opened Jan 15, 2021 by palombom

7 of 11 tasks

Baby Steps Towards De-Sci (Decentralized Science) with Datalad + git annex + IPFS (Interplanetary File Storage System) bhg:washingtondc_usa_1 git_skills:2_branches_PRs programming:Python programming:shell_scripting programming:Unix_command_line programming:Web project_development_status:0_concept_no_content project_tools_skills:familiar project_tools_skills:none project_type:coding_methods project_type:data_management

involves programming

project status:published tools:BIDS tools:Datalad tools:Jupyter topic:reproducible_scientific_methods

#95 opened Dec 11, 2020 by hebbianloop

7 of 13 tasks

Neuroimaging Cookbook 🧠🍳📓 bhg:mtl_can_1 bhg:washingtondc_usa_1 git_skills:0_none git_skills:1_commit_push git_skills:2_branches_PRs git_skills:3_continuous_integration modality:behavioral modality:DWI modality:ECOG modality:EEG modality:fMRI modality:fNIRS modality:MEG modality:MRI modality:PET programming:C++ programming:documentation

Markdown, Sphinx

programming:Java

JS/HTML/CSS, Django or others

programming:Julia programming:Matlab programming:none programming:Python programming:R programming:shell_scripting programming:Unix_command_line programming:Web project_development_status:0_concept_no_content project_tools_skills:comfortable project_tools_skills:familiar project_tools_skills:none project_type:coding_methods project_type:data_management

involves programming

project_type:documentation project status:published tools:AFNI tools:ANTs tools:BIDS tools:Brainstorm tools:CPAC tools:Datalad tools:DIPY tools:FieldTrip tools:fMRIPrep tools:Freesurfer tools:FSL tools:Jupyter tools:MNE tools:MRtrix tools:Nipype tools:NWB

Neurodata Without Borders

tools:SPM topic:Bayesian_approaches topic:causality topic:connectome topic:data_visualisation topic:deep_learning topic:diffusion topic:EEG_EventRelatedResponseModelling topic:Granger_causality topic:ICA topic:machine_learning topic:neural_decoding topic:neural_encoding topic:neural_networks topic:PCA topic:reinforcement_learning topic:reproducible_scientific_methods topic:statistical_modelling topic:tractography

#93 opened Dec 11, 2020 by shawnrhoads

7 tasks done

Try BioImage Suite Web, a modern and powerful software for neuroscience bhg:nyc_usa_1 git_skills:0_none modality:fMRI modality:MRI programming:C++ programming:documentation

Markdown, Sphinx

programming:none project_development_status:2_releases_existing project_tools_skills:none project_type:documentation project status:published topic:connectome topic:data_visualisation topic:MR_methodologies topic:reproducible_scientific_methods

#89 opened Dec 9, 2020 by SNeuroble

8 of 11 tasks

Relating EEG eye-tracking data to attention network subsystems bhg:nyc_usa_1 git_skills:1_commit_push git_skills:2_branches_PRs modality:behavioral modality:EEG modality:eye_tracking programming:Matlab programming:Python programming:Unix_command_line project_development_status:0_concept_no_content project_tools_skills:comfortable project_tools_skills:expert project_tools_skills:familiar project_tools_skills:none project_type:data_management

involves programming

project status:published tools:Jupyter topic:EEG_EventRelatedResponseModelling topic:hypothesis_testing topic:physiology topic:statistical_modelling

#87 opened Dec 8, 2020 by emilyolafson

8 of 11 tasks

Prediction of Personality using Diffusion MRI Local Connectome Fingerprints bhg:pittsburgh_usa_1 git_skills:0_none modality:behavioral modality:DWI modality:MRI programming:Matlab programming:Python programming:R project_tools_skills:comfortable project_tools_skills:expert project_tools_skills:familiar project_type:coding_methods project_type:data_management

involves programming

project_type:method_development project status:published topic:connectome topic:deep_learning topic:diffusion topic:machine_learning topic:MR_methodologies topic:neural_decoding topic:statistical_modelling

#85 opened Dec 8, 2020 by frankyeh

5 of 6 tasks

Towards the Queer Neuroscience&STEM bhg:ankara_tur_1 git_skills:0_none programming:none project_development_status:0_concept_no_content project_tools_skills:none project status:published

#81 opened Dec 3, 2020 by mselimata

9 of 10 tasks

TR-OPEN "Getting Started", Introducing Open Ethical Committee Permissions as an early first step of Open Science bhg:ankara_tur_1 git_skills:0_none programming:documentation

Markdown, Sphinx

project_development_status:0_concept_no_content project_tools_skills:none project_type:documentation project status:published

#80 opened Dec 3, 2020 by mselimata

6 of 7 tasks

Brainhack Proceedings – an open & free journal for Brainhack project outcomes bhg:ankara_tur_1 bhg:marseille_fra_1 bhg:ontario_can_1 git_skills:1_commit_push programming:none programming:Web project_development_status:2_releases_existing project_type:coding_methods project status:published

#76 opened Dec 2, 2020 by katjaq

5 of 10 tasks

Making Of BrainWeb bhg:marseille_fra_1 git_skills:2_branches_PRs project_development_status:2_releases_existing project status:published topic:data_visualisation topic:diversity_inclusivity_equality

#75 opened Dec 2, 2020 by r03ert0

4 of 10 tasks

Optimization and GPU porting of information flow implementation bhg:marseille_fra_1 git_skills:1_commit_push git_skills:2_branches_PRs programming:Python project_development_status:2_releases_existing project_tools_skills:expert project_tools_skills:familiar project_type:method_development project status:published tools:Jupyter tools:MNE topic:causality topic:information_theory topic:physiology

#71 opened Dec 1, 2020 by StanSStanman

5 of 10 tasks

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