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v0.2.0 #59

Merged
merged 11 commits into from
Oct 6, 2020
Merged

v0.2.0 #59

merged 11 commits into from
Oct 6, 2020

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timothymillar
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  • Use non-normalized probability encodings for reads Check probability encoding of SNPs #56
  • Remove probabilistic encoding sub-module
  • Rename allelic and symbolic encoding sub-modules to integer and character
  • Add MEC score to VCF output Calculate MEC #58
  • Rename RC format field to RCOUNT
  • Add RCALLS format field to record the number of variant encoding bases among reads
  • Add RASSIGN format field to record approximate read assignment to haplotypes based on MEC
  • Improve string formatting of floats in VCF output to remove .0 from values without decimals

@timothymillar timothymillar merged commit fd3b35b into PlantandFoodResearch:master Oct 6, 2020
This was referenced Oct 6, 2020
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