Skip to content

Issues: PlantandFoodResearch/MCHap

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 101 Closed
22 Open 101 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Option to report wall time used to compute each locus enhancement New feature or request low priority
#185 opened Dec 9, 2024 by timothymillar
Consider replacing ADMF with AF in find-snvs output vcf format
#183 opened May 14, 2024 by timothymillar
Sparse representation of genotype posterior enhancement New feature or request
#182 opened Apr 9, 2024 by timothymillar
@timothymillar
1
Allow setting of precision for floats in VCF enhancement New feature or request
#171 opened Feb 28, 2024 by timothymillar
@timothymillar
Allow masking of SNV reference alleles enhancement New feature or request low priority
#165 opened Jul 10, 2023 by timothymillar
@timothymillar
Table with likelihood of membership of a read in an allele enhancement New feature or request
#160 opened Mar 8, 2023 by rfinkers
1
Option to drop uncalled haplotypes enhancement New feature or request
#155 opened Feb 23, 2023 by timothymillar
@timothymillar
1
Consider defaulting flat prior across genotypes enhancement New feature or request low priority question Further information is requested
#139 opened Jun 30, 2022 by timothymillar
@timothymillar
Posterior mean dosage 'DS' enhancement New feature or request vcf format
#136 opened Apr 7, 2022 by timothymillar
@timothymillar
Temperature gradiaent for parallel-temporing enhancement New feature or request low priority
#126 opened Mar 13, 2022 by timothymillar Publication
@timothymillar
Documentation documentation
#121 opened Feb 24, 2022 by timothymillar
3 of 6 tasks
Publication
@timothymillar
4
Option to use previous call as initial genotype when re-calling enhancement New feature or request low priority
#116 opened Jul 15, 2021 by timothymillar
@timothymillar
Unifiy posterior mode methods code quality low priority
#114 opened Jul 15, 2021 by timothymillar
@timothymillar
Unify exact calling methods code quality low priority
#111 opened Jul 15, 2021 by timothymillar
@timothymillar
Generalise default and per sample specification of parameters enhancement New feature or request low priority
#107 opened Jun 28, 2021 by timothymillar
@timothymillar
Add CIGAR string for variants. enhancement New feature or request low priority vcf format
#105 opened Jun 24, 2021 by timothymillar
@timothymillar
Consider option to calculate log-likelihoods ignoring dosage for VCF output low priority vcf format
#97 opened May 11, 2021 by timothymillar
@timothymillar
Record unknown/novel alleles enhancement New feature or request low priority vcf format
#89 opened Feb 16, 2021 by timothymillar
@timothymillar
1
Check and improve code coverage code quality
#81 opened Feb 11, 2021 by timothymillar Publication
@timothymillar
Identify haplo-tagging SNPs enhancement New feature or request low priority
#73 opened Jan 12, 2021 by timothymillar
@timothymillar
Investigate supporting fixed-length MNP variants enhancement New feature or request low priority
#51 opened Sep 21, 2020 by timothymillar
@timothymillar
1
Make merging overlapping SNPs optional bug Something isn't working low priority
#50 opened Sep 21, 2020 by timothymillar
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.