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Allow masking of SNV reference alleles #165

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timothymillar opened this issue Jul 10, 2023 · 0 comments
Open

Allow masking of SNV reference alleles #165

timothymillar opened this issue Jul 10, 2023 · 0 comments
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enhancement New feature or request low priority

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timothymillar commented Jul 10, 2023 •
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Reusing the REFMASKED flag, allow masking of the reference allele of a SNV in MCHap assemble. This avoids unnecessarily treating a biallelic SNV as triallelic due to the refence genome differing from the population.
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