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Basic set of features for publication.

  • De novo assembly of a population of fixed ploidy level (tetraploid)
  • Read data in from Bam and config file of loci/SNPs
  • Store MCMC trace
  • QC based on
    • MCMC convergence
    • Read depth
    • Kmer checking
  • Output VCF of calls at specified confidence

Basic set of features for publication.

  • De novo assembly of a population of fixed ploidy level (tetraploid)
  • Read data in from Bam and config file of loci/SNPs
  • Store MCMC trace
  • QC based on
    • MCMC convergence
    • Read depth
    • Kmer checking
  • Output VCF of calls at specified confidence
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