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phenopipe web usage
On this page we will briefly describe how to use the web interface to create, manage and analyze a project.
Before using any of the phenopipe features you have to log in to the system. With what credentials you log in depends on how the application was deployed. If you are unsure ask the administrator who set it up. For technical information please refer to this page.
First of all you need to create a project which represents your experiment and feed the system with the necessary data. To to so navigate to the 'Create Project' page and you will see the following: Create Project
You have to fill out the mandatory fields marked with an asterisk.
The first section contains general information about your project. The start date is the date you will begin your experiment. If you want to start your analysis timeline from a different timepoint, e.g. from day of vernalization. you can to so by checking the 'Use another date for analysis timeline' box and select the date accordingly.
The second section lets you add different sample groups to your project. You specify the name of the group and the treatment of the samples. The value of the treatment field corresponds to the treatment field of an IAP metadata file. The sample group name will be printed onto the labels for identification purposes. But keep in mind that the space on the label is quite restricted so it is a good idea to choose a short and precise group name. The box labeled control let's you mark one group as your control group.
After you added a group you can add more details about it when you click on the newly created bar.
