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Issues list

Using CAMISIM v2.0 to generate metagenomes but the storage run out when generating reads using art

#200 opened Nov 24, 2024 by Andyargueasae

Error in bam file list in line 106

#199 opened Nov 20, 2024 by SMontesinos

Hi,

#197 opened Nov 2, 2024 by HAJRA-sys

Simulating 16S metabarcoding reads?

#196 opened Oct 30, 2024 by marieleoz

Missing main.nf

#195 opened Oct 29, 2024 by mortonjt

Guidance on Simulating Metatranscriptomes for CAMI 2 Challenge Short-Read Metagenomes

#194 opened Sep 13, 2024 by ohickl

Changing read lengths from the default 150bp bug wontfix

#193 opened Jul 21, 2024 by cberta11

NoneType path error when trying to run metagenome_from_profile.py from default_config.ini

#191 opened Jul 16, 2024 by cberta11

Handling coverage

#190 opened Jun 27, 2024 by CorvusVaine

"Population must be a sequence. For dicts or sets, use sorted(d). in line 83" [Python 3.11 compatibility?] bug

#154 opened Feb 27, 2023 by prototaxites

[MetagenomeSimulationPipeline] Empty bam file list in line 106

#150 opened Jan 6, 2023 by Louis-MG

Problem trying to run metagenome_from_profile.py with docker. Is python3 update completed? enhancement help wanted

#149 opened Dec 13, 2022 by MateDuda v2.0

GTDB support enhancement

#140 opened Aug 3, 2022 by AlphaSquad v2.0

Gold standard assembly and binning ran despite being set to false bug

#134 opened May 20, 2022 by elximo v2.0

Add PBsim2

#131 opened Mar 18, 2022 by AlphaSquad v2.0

Include a pre-built database for ete3.

#127 opened Jan 4, 2022 by AlphaSquad v2.0

Update README to latest changes enhancement

#115 opened Jul 16, 2021 by AlphaSquad v2.0

Guidance on abundance.tsv file and output bug

#109 opened Apr 23, 2021 by NienkeMekkes v2.0

Using CAMI format input for metagenome_from_profile.py enhancement

#108 opened Apr 16, 2021 by raquellewei v2.0

Bioconda version? enhancement

#82 opened Jul 9, 2020 by dkoslicki v2.0

[documentation] Give correct arguments to read simulators enhancement

#53 opened Apr 26, 2019 by yoann-dufresne v2.0

Unique filenames per run enhancement

#39 opened Jul 19, 2018 by AlphaSquad v2.0

File of Files for CAMISIM enhancement

#35 opened Mar 8, 2018 by AlphaSquad v2.0

ProTip! Exclude everything labeled bug with -label:bug.

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