Fixes for 22.04 build

[gdevenyi]

Addressing #153 and another bug I got bitten by.

[gdevenyi]

@bcdarwin

[gdevenyi]

BIC-MNI/mni_autoreg#28 pending

[gdevenyi]

These changes succeed in building on Ubuntu 22.04 under the following config

cmake ../minc-toolkit-v2 -DCMAKE_INSTALL_PREFIX=${install_prefix} \
        -DMT_BUILD_ABC=ON \
        -DMT_BUILD_ANTS=OFF \
        -DMT_BUILD_OPENBLAS=ON \
        -DMT_BUILD_VISUAL_TOOLS=ON \
        -DMT_BUILD_C3D=OFF \
        -DMT_USE_OPENMP=ON \
        -DUSE_SYSTEM_GLUT=ON \
        -DBUILD_TESTING=ON \
        -DMT_PACKAGES_PATH=/opt/quarantine/software/minc-toolkit-v2/packagecache &&

All tests also pass.

[gdevenyi]

After this gets merged, I'd like to tag/release 1.9.18.2

[gdevenyi]

Should we default to building openblas so the default config is confirmed buildable?

[bcdarwin]

Should we default to building openblas so the default config is confirmed buildable?

@gdevenyi - building this branch on 22.04 I still hit #153 with external blas, so probably we should?

[gdevenyi]

Updated FREEGLUT version to successfully build with the new gcc.

@gdevenyi - building this branch on 22.04 I still hit #153 with external blas, so probably we should?

@bcdarwin ok, will flip the switch.

[bcdarwin]

Building for me now on Ubuntus 20.04 and 22.04.

[bcdarwin]

@gdevenyi - tag incoming?

[vfonov]

check if it still builds for CentOS 7

[bcdarwin]

so one general issue is that minc-toolkit-config.sh sets LD_LIBRARY_PATH, and when this contains a BLAS it breaks numpy :)

[bcdarwin]

rebuilding on centos now

[gdevenyi]

Tag and release ready

[bcdarwin]

Build succeeded, though I didn't build the visual tools or ANTs/Elastix, but ABC, patch_morphology are fine;
all tests pass.