Fixes for 22.04 build

CMakeLists.txt

@@ -124,7 +124,7 @@ OPTION(MT_BUILD_VISUAL_TOOLS "Build visual tools (Display, Register, postf, ray_
 OPTION(USE_SYSTEM_ITK        "Use System ITK" OFF)
 OPTION(MT_USE_OPENMP         "Use OpenMP multi-threading" OFF)
 OPTION(MT_BUILD_IM           "Build ImageMagick and dependent libraries" OFF)
-OPTION(MT_BUILD_OPENBLAS     "Build OpenBLAS: will require fortran" OFF)
+OPTION(MT_BUILD_OPENBLAS     "Build OpenBLAS: will require fortran" ON)
 #OPTION(MT_USE_OPENMP_BLAS    "Use Build OpenBLAS with OpenMP support" OFF) # TODO: finish this to compile on some platforms
 
 SET(MT_PACKAGES_PATH "${CMAKE_BINARY_DIR}/cache" CACHE PATH  "Directory containing 3rd party packages")
@@ -156,7 +156,7 @@ SET(SUPERBUILD_STAGING_PREFIX ${CMAKE_BINARY_DIR}/external)
 file(MAKE_DIRECTORY ${SUPERBUILD_STAGING_PREFIX}/${CMAKE_INSTALL_PREFIX}/share)
 
 SET(MINC_TEST_ENVIRONMENT
- "PATH=${CMAKE_CURRENT_BINARY_DIR}:${CMAKE_CURRENT_BINARY_DIR}/N3:${CMAKE_CURRENT_BINARY_DIR}/classify:${CMAKE_CURRENT_BINARY_DIR}/minctools/progs:${CMAKE_CURRENT_BINARY_DIR}/mni_autoreg/mincblur:${CMAKE_CURRENT_BINARY_DIR}/mni_autoreg/make_phantom:${CMAKE_CURRENT_BINARY_DIR}/mni_autoreg/minctracc:${SUPERBUILD_STAGING_PREFIX}/${CMAKE_INSTALL_PREFIX}/bin:$ENV{PATH}" 
+ "PATH=${CMAKE_CURRENT_BINARY_DIR}:${CMAKE_CURRENT_BINARY_DIR}/N3:${CMAKE_CURRENT_BINARY_DIR}/classify:${CMAKE_CURRENT_BINARY_DIR}/minctools/progs:${CMAKE_CURRENT_BINARY_DIR}/mni_autoreg/mincblur:${CMAKE_CURRENT_BINARY_DIR}/mni_autoreg/make_phantom:${CMAKE_CURRENT_BINARY_DIR}/mni_autoreg/minctracc:${SUPERBUILD_STAGING_PREFIX}/${CMAKE_INSTALL_PREFIX}/bin:$ENV{PATH}"
 )
 
 LIST(APPEND MINC_TEST_ENVIRONMENT "PERL5LIB=${CMAKE_SOURCE_DIR}/mni-perllib:${CMAKE_CURRENT_BINARY_DIR}/mni-perllib/perl:${CMAKE_CURRENT_BINARY_DIR}/perl-modules:$ENV{PERL5LIB}")
@@ -501,7 +501,7 @@ IF(MT_BUILD_ITK_TOOLS)
    build_C3D(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${ITK_DIR})
    ADD_DEPENDENCIES(C3D ITKv4 minc2)
   ENDIF(MT_BUILD_C3D)
-  
+
   IF(MT_BUILD_ELASTIX)
    INCLUDE(BuildElastix)
    build_Elastix(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${ITK_DIR})
@@ -511,21 +511,21 @@ IF(MT_BUILD_ITK_TOOLS)
   INCLUDE(BuildEZMINC)
   build_EZMINC(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${CMAKE_BINARY_DIR}/libminc ${CMAKE_BINARY_DIR}/bicpl ${ITK_DIR})
   ADD_DEPENDENCIES(EZMINC ITKv4 GSL minc2 minc_io bicpl)
-  
+
   INCLUDE(BuildPatchMorphology)
   build_PatchMorphology(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${ITK_DIR})
   ADD_DEPENDENCIES(patch_morphology ITKv4 minc_io)
-  
+
   IF(MT_BUILD_OPENBLAS)
     ADD_DEPENDENCIES(patch_morphology OpenBLAS)
   ENDIF(MT_BUILD_OPENBLAS)
-  
+
   IF(MT_BUILD_ABC)
    INCLUDE(BuildABC)
    build_ABC(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${ITK_DIR})
    ADD_DEPENDENCIES(ABC ITKv4 minc2)
   ENDIF(MT_BUILD_ABC)
-  
+
 ENDIF(MT_BUILD_ITK_TOOLS)
 
 # tools requiring OpenBLAS
@@ -544,9 +544,9 @@ ENDIF()
 IF(MT_BUILD_VISUAL_TOOLS)
   FIND_PACKAGE( OpenGL REQUIRED )
   FIND_PACKAGE( X11    QUIET )
-  
+
   IF(USE_SYSTEM_GLUT)
-    FIND_PACKAGE( GLUT   REQUIRED ) 
+    FIND_PACKAGE( GLUT   REQUIRED )
   ELSE(USE_SYSTEM_GLUT)
     INCLUDE(BuildFREEGLUT) # newer version of build_freeglut seem to be causing problems
     build_freeglut( ${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX})
@@ -590,7 +590,7 @@ IF(MT_BUILD_IM)
     INCLUDE(BuildPNG)
     INCLUDE(BuildFREETYPE)
     INCLUDE(BuildIM)
-        
+
     build_jpeg(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX})
     build_png(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${ZLIB_INCLUDE_DIR} ${ZLIB_LIBRARY} ${ZLIB_DIR} )
     build_freetype(${CMAKE_INSTALL_PREFIX} ${SUPERBUILD_STAGING_PREFIX} ${ZLIB_INCLUDE_DIR} ${ZLIB_LIBRARY} ${ZLIB_DIR})

cmake-modules/BuildFREEGLUT.cmake

@@ -51,15 +51,15 @@ macro(build_freeglut install_prefix staging_prefix)
     )
   endif()
 
-GET_PACKAGE("http://downloads.sourceforge.net/project/freeglut/freeglut/3.2.1/freeglut-3.2.1.tar.gz" "cd5c670c1086358598a6d4a9d166949d" "freeglut-3.2.1.tar.gz" FREEGLUT_PATH ) 
+GET_PACKAGE("https://github.com/FreeGLUTProject/freeglut/releases/download/v3.2.2/freeglut-3.2.2.tar.gz" "485c1976165315fc42c0b0a1802816d9" "freeglut-3.2.2.tar.gz" FREEGLUT_PATH )
 
 # have to find  GL X11 Xrandr Xi
 FIND_PACKAGE(OpenGL REQUIRED)
 FIND_PACKAGE(X11    REQUIRED)
 
 ExternalProject_Add(FREEGLUT
     URL "${FREEGLUT_PATH}"
-    URL_MD5 "cd5c670c1086358598a6d4a9d166949d"
+    URL_MD5 "485c1976165315fc42c0b0a1802816d9"
   SOURCE_DIR FREEGLUT
   BINARY_DIR FREEGLUT-build
   LIST_SEPARATOR :::

cmake-modules/BuildOpenBLAS.cmake

@@ -93,7 +93,7 @@ macro(build_open_blas install_prefix staging_prefix build_parallel)
             INSTALL_DIR ${staging_prefix}/${install_prefix}
       )
 
-  SET(OpenBLAS_INCLUDE_DIRS ${staging_prefix}/${install_prefix}/include )
+  SET(OpenBLAS_INCLUDE_DIRS ${staging_prefix}/${install_prefix}/include/openblas )
   SET(OpenBLAS_LIBRARIES    ${staging_prefix}/${install_prefix}/lib${LIB_SUFFIX}/libopenblas.so  )
   SET(OpenBLAS_LIBRARY      ${OpenBLAS_LIBRARIES})
   SET(OpenBLAS_DIR          ${staging_prefix}/${install_prefix}/share/cmake/OpenBLAS )

cmake-modules/BuildPatchMorphology.cmake

@@ -40,7 +40,8 @@ macro(build_PatchMorphology install_prefix staging_prefix itk_dir)
         -DCMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING=${CMAKE_STATIC_LINKER_FLAGS_RELEASE}
         -DCMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING=${CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO}
         -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
-        -DOpenBLAS_INCLUDE_DIR:PATH=${OpenBLAS_INCLUDE_DIRS}
+        -DOpenBLAS_INCLUDE_DIRS:PATH=${OpenBLAS_INCLUDE_DIRS}
+        -DOpenBLAS_LIBRARIES:PATH=${OpenBLAS_LIBRARIES}
         -DOpenBLAS_LIBRARY:PATH=${OpenBLAS_LIBRARY}
         -DCMAKE_DISABLE_FIND_PACKAGE_OpenBLAS:BOOL=ON
         -DOpenBLAS_DIR:PATH=${OpenBLAS_DIR}