Explanation for files

2019_G2F_metadata_enviromental.tsv

Metadata of 2019 G2F samples

G2F_metadata_2019_duplicate_pedigree.txt

SampleID of G2F duplicate samples

aligned-rep-seqs.qza

representative sequence

alpha_diversity_metrics.txt

alpha diversity name for loop operation

beta_diversity_metrics.txt

beta diversity name for loop operation

column_name_list.txt

Metadata column name

dada2_table-no-mitochondria-no-chloroplast-blank-filtered-yellow-stripe-duplicate-pedigree.qza

ASV table after filtering mitochondria, chloroplast, and blank, keeping samples with duplicate

dada2_table-no-mitochondria-no-chloroplast-blank-filtered.qza

ASV table after filtering mitochondria, chloroplast, and blank

dada2_table-no-mitochondria-no-chloroplast.qza

ASV table after filtering mitochondria and chloroplast

dada2_table.qza

original ASV table

path_abun_unstrat_descrip.tsv

Pathway estimation based on ASV table with only duplicated samples of YS pedigree

picrust2_workflow.sh

command for run picrust2 on sapelo2

work_flow_redo.sh

Bash scripts using qiime2 to process raw data, build ASV table, and perform alpha and beta diversity analysis

yellow_strip_gbs_data_orinigal.tsv

The file that contains the original yellow stripe species name