Explanation for files
2019_G2F_metadata_enviromental.tsv
Metadata of 2019 G2F samples
G2F_metadata_2019_duplicate_pedigree.txt
SampleID of G2F duplicate samples
aligned-rep-seqs.qza
representative sequence
alpha_diversity_metrics.txt
alpha diversity name for loop operation
beta_diversity_metrics.txt
beta diversity name for loop operation
column_name_list.txt
Metadata column name
dada2_table-no-mitochondria-no-chloroplast-blank-filtered-yellow-stripe-duplicate-pedigree.qza
ASV table after filtering mitochondria, chloroplast, and blank, keeping samples with duplicate
dada2_table-no-mitochondria-no-chloroplast-blank-filtered.qza
ASV table after filtering mitochondria, chloroplast, and blank
dada2_table-no-mitochondria-no-chloroplast.qza
ASV table after filtering mitochondria and chloroplast
dada2_table.qza
original ASV table
path_abun_unstrat_descrip.tsv
Pathway estimation based on ASV table with only duplicated samples of YS pedigree
picrust2_workflow.sh
command for run picrust2 on sapelo2
work_flow_redo.sh
Bash scripts using qiime2 to process raw data, build ASV table, and perform alpha and beta diversity analysis
yellow_strip_gbs_data_orinigal.tsv
The file that contains the original yellow stripe species name